Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   H9K48_RS08275 Genome accession   NZ_CP064033
Coordinates   1698224..1699768 (+) Length   514 a.a.
NCBI ID   WP_029842790.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DLM1805     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1693224..1704768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K48_RS08250 (H9K48_08220) - 1693525..1693845 (+) 321 WP_005454817.1 STAS domain-containing protein -
  H9K48_RS08255 (H9K48_08225) - 1693872..1694774 (+) 903 WP_065764902.1 OmpA family protein -
  H9K48_RS08260 (H9K48_08230) - 1694804..1696873 (+) 2070 WP_228231962.1 SLBB domain-containing protein -
  H9K48_RS08265 (H9K48_08235) - 1696873..1697559 (+) 687 WP_005454821.1 CpsD/CapB family tyrosine-protein kinase -
  H9K48_RS08270 (H9K48_08240) - 1697572..1697952 (+) 381 WP_005454845.1 Hpt domain-containing protein -
  H9K48_RS08275 (H9K48_08245) luxO 1698224..1699768 (+) 1545 WP_029842790.1 sigma-54 dependent transcriptional regulator Regulator
  H9K48_RS08280 (H9K48_08250) - 1699743..1700813 (+) 1071 WP_086583800.1 glycosyltransferase family 4 protein -
  H9K48_RS08285 (H9K48_08255) - 1700964..1702148 (+) 1185 WP_005455046.1 glycosyltransferase -
  H9K48_RS08290 (H9K48_08260) - 1702159..1703331 (+) 1173 WP_086583802.1 glycosyltransferase family 4 protein -
  H9K48_RS08295 (H9K48_08265) - 1703324..1704754 (+) 1431 WP_170926572.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57458.31 Da        Isoelectric Point: 5.8574

>NTDB_id=441235 H9K48_RS08275 WP_029842790.1 1698224..1699768(+) (luxO) [Vibrio parahaemolyticus strain DLM1805]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNAPAIQTQPIEPVQPVQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=441235 H9K48_RS08275 WP_029842790.1 1698224..1699768(+) (luxO) [Vibrio parahaemolyticus strain DLM1805]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGAAGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAGCGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGCTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTGGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACGAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTTCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATT
GTCACGCTGGCCAAGCATTTTCTCACAACTTACGCCAAAGAGGACAAGAAAAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATACAAACACAACCCATTGAACCAGT
GCAACCTGTTCAAGAGGTGCCTGCTCAACAAACGCAGCCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCGT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCCTATTGTGAT
GGTAACGTGCTCAATGCCGCGGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

48.898

97.082

0.475