Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HIN88_RS17170 Genome accession   NZ_CP051866
Coordinates   3579610..3581031 (+) Length   473 a.a.
NCBI ID   WP_064191954.1    Uniprot ID   A0A9P2L8G0
Organism   Acinetobacter baumannii strain Ab-C63     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3574610..3586031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN88_RS17150 (HIN88_17150) thrC 3574865..3576004 (+) 1140 WP_000063593.1 threonine synthase -
  HIN88_RS17155 (HIN88_17155) pbpG 3576113..3577159 (-) 1047 WP_003384760.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  HIN88_RS17160 (HIN88_17160) - 3577372..3578007 (+) 636 WP_000633799.1 response regulator -
  HIN88_RS17165 (HIN88_17165) pilS 3578018..3579586 (+) 1569 WP_064191955.1 sensor histidine kinase Regulator
  HIN88_RS17170 (HIN88_17170) pilR 3579610..3581031 (+) 1422 WP_064191954.1 sigma-54-dependent transcriptional regulator Regulator
  HIN88_RS17175 (HIN88_17175) - 3581035..3582219 (-) 1185 WP_064191953.1 S41 family peptidase -
  HIN88_RS17180 (HIN88_17180) gpmI 3582235..3583782 (-) 1548 WP_064191952.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  HIN88_RS17185 (HIN88_17185) lptG 3583908..3584978 (-) 1071 WP_000881094.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53024.18 Da        Isoelectric Point: 6.5599

>NTDB_id=441202 HIN88_RS17170 WP_064191954.1 3579610..3581031(+) (pilR) [Acinetobacter baumannii strain Ab-C63]
MAEQQPLVLLVDDEEDLCLLMQMTLAQMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGIDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKIEHDVTENALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGDDVLL
LANHFIQKICMEWETPPKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSEDATIDISHLHPAPLRANISNPFASAAQS
IQTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=441202 HIN88_RS17170 WP_064191954.1 3579610..3581031(+) (pilR) [Acinetobacter baumannii strain Ab-C63]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACA
AATGGGAATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGATGCGTGTT
TAACCGACTTAAACCTACCCGATGGGAGCGGGATAGATTTAGTTAAACATGTCTCTCAAAATTATACTAATACTCCCATT
GCCGTTTTAACTGCCTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGTGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAATAGAGCATGATGTTACCGAGAATG
CGTTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATCCAGCAGCTACGTATTGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACTGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCCAATCTGGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACCGAACTCATGGAAAGTGAGCTTTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAGCAAGGCCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGCGCAGTACAGGAAAAAAAGATCCGACCTGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGATTTAGATTTATTGGTTAGACAAGGTAAATTCC
GTCAAGATTTATTCTTCCGTATTCATGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGACGATGTCCTTTTA
CTGGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGCCACCTAAACAATTAACAGAAGCAGCCGAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGATG
CCACCATAGATATATCTCATTTACATCCTGCTCCACTAAGAGCGAATATTTCTAATCCTTTTGCTTCGGCTGCTCAAAGC
ATACAAACCACTGTGGCGGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGTCTTGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCACTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGCTTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

98.52

100

0.985
  pilR Pseudomonas aeruginosa PAK

50.327

97.04

0.488