Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   HIN88_RS16505 Genome accession   NZ_CP051866
Coordinates   3434073..3436301 (+) Length   742 a.a.
NCBI ID   WP_064192012.1    Uniprot ID   A0A9P2P5F7
Organism   Acinetobacter baumannii strain Ab-C63     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3429073..3441301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN88_RS16480 (HIN88_16480) lnt 3429459..3431018 (+) 1560 WP_001203095.1 apolipoprotein N-acyltransferase -
  HIN88_RS16485 (HIN88_16485) - 3431020..3431358 (-) 339 WP_000434938.1 tRNA-binding protein -
  HIN88_RS16490 (HIN88_16490) - 3431503..3431847 (-) 345 WP_032046457.1 hypothetical protein -
  HIN88_RS16495 (HIN88_16495) gspG 3432114..3432695 (-) 582 WP_064192014.1 type II secretion system major pseudopilin GspG -
  HIN88_RS16500 (HIN88_16500) gspF 3432719..3433924 (-) 1206 WP_001112089.1 type II secretion system inner membrane protein GspF -
  HIN88_RS16505 (HIN88_16505) priA 3434073..3436301 (+) 2229 WP_064192012.1 primosomal protein N' Machinery gene
  HIN88_RS16510 (HIN88_16510) - 3436378..3438219 (+) 1842 WP_064192011.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  HIN88_RS16515 (HIN88_16515) - 3438385..3439260 (+) 876 WP_001281765.1 Hsp33 family molecular chaperone HslO -
  HIN88_RS16520 (HIN88_16520) - 3439398..3440009 (+) 612 WP_001105725.1 LysE family translocator -
  HIN88_RS16525 (HIN88_16525) - 3440160..3441116 (+) 957 WP_064192010.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83950.83 Da        Isoelectric Point: 8.6622

>NTDB_id=441196 HIN88_RS16505 WP_064192012.1 3434073..3436301(+) (priA) [Acinetobacter baumannii strain Ab-C63]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQETFTGNFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILYIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=441196 HIN88_RS16505 WP_064192012.1 3434073..3436301(+) (priA) [Acinetobacter baumannii strain Ab-C63]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAAACATTTACAGGTAACTTTCAGCTTAAGGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTCCCGATTGGTGA
GGTGATGCAGACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGATAATGCCGAAGCTTTACTAAAACGTTCAATCAAACAGCAAGACGCTTATCAAATTTTAAAATTACATCCTGCC
GGAACCACTGAAAATATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTTAAAGCACTGCAAAAGAAAGGTCTCGTAGA
CTGTACGCTTGAGCCTCATGACTTTAGCCCAGCCCCTGTGCAATTGGCGCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAGGCCACCCAGCACGTCCTTAATGCGCAGCATCAATATCAAGCCTTTTTATTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTACCTGCACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTTCCTGAAATTGGTTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCATTATTACATTCAGGCTTAAATGACTCTA
AACGCCTACAAGCCTGGCAACAAGCACAGACTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTGATCATTTTAGATGAAGAACATGACCTTTCTTATAAGCAACAAGAAGGTTTCCGTTACCATGC
ACGTGATGTCGCGCTTTATCGAGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCAGCAACCCCAAGCATTGACAGTT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCGCTTCAGCTGAACCAACGTGCAGGCCATGCGCTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAACATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACCTTAGCAAG
AAAAGAACAAGTTTTAATTTTTTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCACATTTTACGTTGCACACTCAGCCCTACTCTTACTTACATTGTCACCACTGTGGCACCGTT
CATCGCCTGCCAGACCACTGCCCTGAGTGTCAGCAAAAAAGCCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTCCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAACAAAATAAACCTTCGATTTTGCTCGGTACGCAAATGTTGGCAAAGGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTATACATCGATGCAGGTTTATTGAGTGTCGATATTCGAGCGCCAGAGCGTACTGCACA
GTTGATTGTACAAGTCGCTGGTCGTGCAGGTCGTGGAGAACACAAAGGCCATGTTTATTTACAGACTTTAAGGCCGGATC
ACCCTTTACTTACCACACTCATCGAAAAAGATTATCGTGCGGTTGCCAAACAAACGCTGGCTGAACGTAAAGTTGCTTTA
CTCCCCCCTTATCGTTATGCAGTCTTAATTCGTGCTGAGTCGAAAGATCGTGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGTCAAATTGCAGGTGACATTGTTGATATCTGGGGGCCAATTCCAGCGCCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTCCATGCGCCAAGACAGCATCAACTTAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.844

100

0.978