Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   HIN88_RS15835 Genome accession   NZ_CP051866
Coordinates   3294148..3294948 (-) Length   266 a.a.
NCBI ID   WP_004738086.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-C63     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3289148..3299948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN88_RS15815 (HIN88_15815) - 3290213..3290911 (-) 699 WP_000058788.1 YfgM family protein -
  HIN88_RS15820 (HIN88_15820) hisS 3290940..3292232 (-) 1293 WP_000095254.1 histidine--tRNA ligase -
  HIN88_RS15825 (HIN88_15825) ispG 3292229..3293344 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  HIN88_RS15830 (HIN88_15830) - 3293366..3294157 (-) 792 WP_064192053.1 helix-turn-helix domain-containing protein -
  HIN88_RS15835 (HIN88_15835) pilF 3294148..3294948 (-) 801 WP_004738086.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  HIN88_RS15840 (HIN88_15840) rlmN 3294964..3296196 (-) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  HIN88_RS15845 (HIN88_15845) ndk 3296319..3296750 (-) 432 WP_064192052.1 nucleoside-diphosphate kinase -
  HIN88_RS15850 (HIN88_15850) iscX 3296864..3297064 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  HIN88_RS15855 (HIN88_15855) - 3297164..3297715 (-) 552 WP_000669565.1 phosphatase PAP2 family protein -
  HIN88_RS15860 (HIN88_15860) - 3297740..3299038 (-) 1299 WP_103891246.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30094.44 Da        Isoelectric Point: 9.2307

>NTDB_id=441192 HIN88_RS15835 WP_004738086.1 3294148..3294948(-) (pilF) [Acinetobacter baumannii strain Ab-C63]
MSTPKLKIMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=441192 HIN88_RS15835 WP_004738086.1 3294148..3294948(-) (pilF) [Acinetobacter baumannii strain Ab-C63]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACTTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGTGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

100

100

1
  pilF Acinetobacter baylyi ADP1

74.231

97.744

0.726