Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PM3016_RS36080 Genome accession   NC_016935
Coordinates   8614061..8615011 (-) Length   316 a.a.
NCBI ID   WP_014372717.1    Uniprot ID   H6NGM8
Organism   Paenibacillus mucilaginosus 3016     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8609061..8620011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PM3016_RS36055 (PM3016_7358) - 8609443..8610264 (-) 822 WP_013921472.1 MIP/aquaporin family protein -
  PM3016_RS36060 (PM3016_7359) - 8610476..8611042 (-) 567 WP_014372714.1 glycerol-3-phosphate responsive antiterminator -
  PM3016_RS36065 (PM3016_7360) - 8611322..8612287 (-) 966 WP_014372715.1 siderophore ABC transporter substrate-binding protein -
  PM3016_RS36070 (PM3016_7361) - 8612366..8613124 (-) 759 WP_014372716.1 ABC transporter ATP-binding protein -
  PM3016_RS36075 (PM3016_7362) - 8613118..8614068 (-) 951 WP_013921476.1 iron chelate uptake ABC transporter family permease subunit -
  PM3016_RS36080 (PM3016_7363) ceuB 8614061..8615011 (-) 951 WP_014372717.1 ABC transporter permease Machinery gene
  PM3016_RS36085 (PM3016_7364) - 8615268..8616446 (-) 1179 WP_013921478.1 NAD(P)/FAD-dependent oxidoreductase -
  PM3016_RS36090 (PM3016_7365) - 8616478..8616924 (-) 447 WP_013921479.1 DUF1641 domain-containing protein -
  PM3016_RS36100 (PM3016_7366) gluQRS 8617576..8618541 (+) 966 WP_014372718.1 tRNA glutamyl-Q(34) synthetase GluQRS -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35052.37 Da        Isoelectric Point: 9.6654

>NTDB_id=44115 PM3016_RS36080 WP_014372717.1 8614061..8615011(-) (ceuB) [Paenibacillus mucilaginosus 3016]
MKRRYLVIALIFLSFCSVFIGVKDISPLDIFTLREDQLQILLVSRLPRLLSILMAGVSMSIIGLIMQQLSRNKFVSPTTS
GTEDSARFGIMVAMLLFASASPLEKMLVAFVFALAGTFIFMRILDKVKYKDSIFIPLVGLMFGNIVSSITTFFAYKYDLV
QSMSAWLMGDFSMIVKGRYEMLYISIPLVIAAYVFADKFTVAGMGEDFAMNLGLNYKQVVNLGLVLVSLVSAVVILTVGM
IPFLGLIVPNIVTILRGDHLRKSLPDTAMLGAVFVLFCDVLGRVIIYPYEISIGLTVGVIGSAIFLYLLMRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=44115 PM3016_RS36080 WP_014372717.1 8614061..8615011(-) (ceuB) [Paenibacillus mucilaginosus 3016]
ATGAAAAGAAGATATCTAGTGATTGCATTGATTTTTCTGTCATTCTGCTCCGTCTTCATCGGAGTGAAAGATATTTCACC
TCTGGATATCTTTACCTTAAGGGAAGATCAGCTTCAGATTCTGCTGGTAAGCAGACTGCCCCGGCTGCTGAGCATTCTGA
TGGCCGGTGTGAGCATGAGCATCATCGGACTGATCATGCAGCAGCTCAGCCGCAACAAGTTCGTGTCCCCGACCACCTCG
GGGACGGAGGATTCGGCGCGGTTCGGCATCATGGTGGCGATGCTCCTGTTCGCCTCCGCTTCTCCGCTTGAGAAGATGCT
GGTAGCCTTCGTCTTTGCCCTCGCCGGGACGTTCATCTTCATGCGAATTCTCGACAAGGTGAAGTACAAGGATTCGATCT
TCATTCCTCTGGTGGGGCTGATGTTCGGCAATATCGTCTCTTCCATCACGACCTTCTTCGCCTATAAGTACGATCTCGTC
CAGAGCATGTCCGCCTGGCTGATGGGGGACTTCTCGATGATCGTCAAAGGGCGGTACGAGATGCTGTATATCAGCATTCC
GCTCGTGATTGCGGCTTACGTGTTCGCCGATAAGTTCACGGTTGCGGGAATGGGCGAGGACTTCGCCATGAATCTCGGGC
TGAATTACAAGCAGGTCGTCAATCTCGGCCTGGTGCTGGTCTCTCTGGTATCGGCGGTCGTGATCCTGACAGTCGGCATG
ATACCGTTCCTCGGGCTCATCGTACCGAACATCGTGACGATCCTGCGGGGCGACCATCTGAGGAAGAGCCTGCCCGATAC
GGCCATGCTCGGCGCCGTGTTCGTTCTGTTCTGCGATGTGCTCGGACGCGTCATCATTTATCCGTATGAGATCTCGATCG
GTCTGACAGTCGGGGTCATCGGCAGCGCGATCTTCCTGTACCTGCTAATGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H6NGM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.266

100

0.513

Multiple sequence alignment