Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   HIN89_RS01250 Genome accession   NZ_CP051862
Coordinates   255313..255639 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain Ab-C102     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 250313..260639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN89_RS01225 (HIN89_01225) hemC 250930..251847 (+) 918 WP_031956197.1 hydroxymethylbilane synthase -
  HIN89_RS01230 (HIN89_01230) - 251852..252619 (+) 768 WP_004836281.1 uroporphyrinogen-III synthase -
  HIN89_RS01235 (HIN89_01235) - 252628..253467 (+) 840 WP_004836279.1 hypothetical protein -
  HIN89_RS01240 (HIN89_01240) - 253477..254670 (+) 1194 WP_004836276.1 hypothetical protein -
  HIN89_RS01245 (HIN89_01245) - 254678..255118 (+) 441 WP_000661569.1 acyl-CoA thioesterase -
  HIN89_RS01250 (HIN89_01250) hns 255313..255639 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  HIN89_RS01255 (HIN89_01255) gspN 255971..256714 (+) 744 WP_000730343.1 type II secretion system protein N -
  HIN89_RS01260 (HIN89_01260) - 256714..257550 (+) 837 WP_000862737.1 type II secretion system protein N -
  HIN89_RS01265 (HIN89_01265) gspD 257592..259868 (+) 2277 WP_169040918.1 type II secretion system secretin GspD -
  HIN89_RS01270 (HIN89_01270) - 259909..260538 (+) 630 WP_000219972.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=441121 HIN89_RS01250 WP_000801427.1 255313..255639(+) (hns) [Acinetobacter baumannii strain Ab-C102]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=441121 HIN89_RS01250 WP_000801427.1 255313..255639(+) (hns) [Acinetobacter baumannii strain Ab-C102]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCATATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1