Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   IR210_RS02015 Genome accession   NZ_CP063983
Coordinates   438757..439434 (-) Length   225 a.a.
NCBI ID   WP_000178174.1    Uniprot ID   A0A0H2VBG7
Organism   Escherichia coli strain 25DN     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 433757..444434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IR210_RS02000 (IR210_02000) chiA 435115..437817 (+) 2703 WP_000773147.1 bifunctional chitinase/lysozyme -
  IR210_RS02005 (IR210_02005) bfd 437986..438180 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  IR210_RS02010 (IR210_02010) bfr 438252..438728 (+) 477 WP_000675504.1 bacterioferritin -
  IR210_RS02015 (IR210_02015) pilD 438757..439434 (-) 678 WP_000178174.1 prepilin peptidase GspO Machinery gene
  IR210_RS02020 (IR210_02020) gspM 439434..439895 (-) 462 WP_001298207.1 type II secretion system protein GspM -
  IR210_RS02025 (IR210_02025) gspL 439892..441055 (-) 1164 WP_194446206.1 type II secretion system protein GspL -
  IR210_RS02030 (IR210_02030) gspK 441070..442053 (-) 984 Protein_408 type II secretion system minor pseudopilin GspK -
  IR210_RS02035 (IR210_02035) gspJ 442046..442633 (-) 588 WP_000610637.1 type II secretion system minor pseudopilin GspJ -
  IR210_RS02040 (IR210_02040) gspI 442626..443003 (-) 378 WP_001041742.1 type II secretion system minor pseudopilin GspI -
  IR210_RS02045 (IR210_02045) gspH 443000..443509 (-) 510 WP_001076033.1 type II secretion system minor pseudopilin GspH -
  IR210_RS02050 (IR210_02050) gspG 443517..443954 (-) 438 WP_001202877.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24866.76 Da        Isoelectric Point: 7.6364

>NTDB_id=441115 IR210_RS02015 WP_000178174.1 438757..439434(-) (pilD) [Escherichia coli strain 25DN]
MTMLLPLFILVGFIAGYFVNVMAYHLSPLEDKTALTFRQVLVHFWQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQSGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTIPTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=441115 IR210_RS02015 WP_000178174.1 438757..439434(-) (pilD) [Escherichia coli strain 25DN]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGTCATGGCCTATCACCTCTC
GCCTTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCTGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGCGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATTGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGCACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTCTGGATTAATTGATTTACATGATGCGGTTTATGGCGCGGTCGCTG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCGTGGTGTGGCTGGCAAACGTTACCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATACCCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGATATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VBG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

33.333

100

0.387
  pilD Vibrio cholerae strain A1552

34.661

100

0.387