Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HIN89_RS00775 Genome accession   NZ_CP051862
Coordinates   156202..157332 (-) Length   376 a.a.
NCBI ID   WP_002124758.1    Uniprot ID   A0A009QFQ7
Organism   Acinetobacter baumannii strain Ab-C102     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 151202..162332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN89_RS00750 (HIN89_00750) - 151376..152140 (-) 765 WP_000786955.1 AraC family transcriptional regulator -
  HIN89_RS00755 (HIN89_00755) - 152162..153376 (-) 1215 WP_000372840.1 MFS transporter -
  HIN89_RS00760 (HIN89_00760) - 153513..154163 (+) 651 WP_012300783.1 TetR/AcrR family transcriptional regulator -
  HIN89_RS00765 (HIN89_00765) - 154269..155189 (+) 921 WP_000084546.1 DMT family transporter -
  HIN89_RS00770 (HIN89_00770) - 155582..156151 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  HIN89_RS00775 (HIN89_00775) dprA 156202..157332 (-) 1131 WP_002124758.1 DNA-processing protein DprA Machinery gene
  HIN89_RS00780 (HIN89_00780) tsaP 157353..158507 (-) 1155 WP_000755281.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  HIN89_RS00785 (HIN89_00785) def 158630..159160 (+) 531 WP_001196539.1 peptide deformylase -
  HIN89_RS00790 (HIN89_00790) - 159197..159625 (+) 429 WP_000231983.1 DUF2946 family protein -
  HIN89_RS00795 (HIN89_00795) - 159698..161785 (+) 2088 WP_001120676.1 TonB-dependent copper receptor -
  HIN89_RS00800 (HIN89_00800) - 161839..162045 (+) 207 WP_000182542.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41816.33 Da        Isoelectric Point: 6.6658

>NTDB_id=441115 HIN89_RS00775 WP_002124758.1 156202..157332(-) (dprA) [Acinetobacter baumannii strain Ab-C102]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
RQHTDFILTAGDSGYPSQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=441115 HIN89_RS00775 WP_002124758.1 156202..157332(-) (dprA) [Acinetobacter baumannii strain Ab-C102]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCATTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGGCAGGTGACTCAGGCTACCCCTCTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTACTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCACATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAACTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(328-369)

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009QFQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

98.404

100

0.984
  dprA Acinetobacter baumannii D1279779

98.138

100

0.981
  dprA Acinetobacter baylyi ADP1

70.341

100

0.713
  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378