Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PM3016_RS32450 Genome accession   NC_016935
Coordinates   7816044..7816439 (+) Length   131 a.a.
NCBI ID   WP_413783347.1    Uniprot ID   -
Organism   Paenibacillus mucilaginosus 3016     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 7811044..7821439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PM3016_RS32425 (PM3016_6625) - 7811281..7811850 (-) 570 WP_014372294.1 GNAT family N-acetyltransferase -
  PM3016_RS32430 (PM3016_6626) trxB 7812236..7813189 (+) 954 WP_014372295.1 thioredoxin-disulfide reductase -
  PM3016_RS32440 (PM3016_6628) - 7813914..7814888 (-) 975 WP_014372297.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  PM3016_RS32445 (PM3016_6629) - 7815070..7815864 (+) 795 WP_014372298.1 PaaX family transcriptional regulator C-terminal domain-containing protein -
  PM3016_RS32450 (PM3016_6630) nucA/comI 7816044..7816439 (+) 396 WP_413783347.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PM3016_RS32455 (PM3016_6631) - 7816502..7817008 (+) 507 WP_014372299.1 competence protein ComJ -
  PM3016_RS32460 (PM3016_6632) - 7817252..7817926 (+) 675 WP_014372300.1 hypothetical protein -
  PM3016_RS32465 (PM3016_6633) - 7817999..7818826 (-) 828 WP_014372301.1 sugar phosphate isomerase/epimerase family protein -
  PM3016_RS32470 (PM3016_6634) - 7818922..7819401 (-) 480 WP_014372302.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14222.66 Da        Isoelectric Point: 4.3998

>NTDB_id=44108 PM3016_RS32450 WP_413783347.1 7816044..7816439(+) (nucA/comI) [Paenibacillus mucilaginosus 3016]
MTAALAGGLFTLHTSQAAAAGEYDAVLYFPFNKYPYTGDHIRDAIAAGHPDVCTIDRDGADENRAESLQGIPTKTGYDRD
EWPMAMCEEGGAGADVRYVPYSDNRGSGSWVGNQLSVYPDGTRIKFIMSYN

Nucleotide


Download         Length: 396 bp        

>NTDB_id=44108 PM3016_RS32450 WP_413783347.1 7816044..7816439(+) (nucA/comI) [Paenibacillus mucilaginosus 3016]
ATGACCGCCGCTCTCGCCGGAGGCCTCTTCACCCTGCATACGAGCCAGGCAGCAGCTGCCGGAGAGTACGACGCCGTCCT
GTATTTCCCGTTCAACAAGTATCCGTACACGGGAGACCATATCCGTGATGCGATCGCCGCCGGCCATCCGGACGTCTGCA
CGATCGACCGCGACGGAGCCGACGAGAACCGCGCCGAATCGCTCCAGGGCATCCCCACCAAGACAGGCTATGACCGGGAC
GAGTGGCCGATGGCCATGTGCGAGGAAGGCGGCGCCGGCGCCGATGTCCGCTACGTGCCTTACTCCGACAACCGGGGCTC
GGGCTCCTGGGTAGGCAACCAGCTCTCCGTTTACCCGGACGGCACCCGGATCAAGTTCATCATGTCGTATAACTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(36-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

54.4

95.42

0.519

Multiple sequence alignment