Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HIR76_RS12200 Genome accession   NZ_CP051860
Coordinates   2364270..2364890 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2359270..2369890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIR76_RS12160 (HIR76_15445) ptsA 2360401..2360907 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  HIR76_RS12165 (HIR76_15440) ypqA 2361045..2361464 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  HIR76_RS12170 (HIR76_15435) sppG 2361485..2361862 (-) 378 WP_004398696.1 YppG family protein -
  HIR76_RS12175 (HIR76_15430) yppF 2362050..2362238 (+) 189 WP_003230690.1 YppF family protein -
  HIR76_RS12180 (HIR76_15425) yppE 2362277..2362648 (-) 372 WP_003246080.1 YppE family protein -
  HIR76_RS12185 (HIR76_15420) yppD 2362694..2362939 (-) 246 WP_004398488.1 YppD family protein -
  HIR76_RS12190 (HIR76_15415) sspM 2363138..2363242 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  HIR76_RS12195 (HIR76_15410) yppC 2363267..2364229 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  HIR76_RS12200 (HIR76_15405) recU 2364270..2364890 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  HIR76_RS12205 (HIR76_15400) ponA 2364912..2367656 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  HIR76_RS12210 (HIR76_15395) ypoC 2367732..2368226 (-) 495 WP_009967579.1 YpoC family protein -
  HIR76_RS12215 (HIR76_15390) nth 2368223..2368882 (-) 660 WP_009967580.1 endonuclease III -
  HIR76_RS12220 (HIR76_15385) dnaD 2368901..2369599 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=441058 HIR76_RS12200 WP_004399067.1 2364270..2364890(+) (recU) [Bacillus subtilis subsp. subtilis str. 168]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=441058 HIR76_RS12200 WP_004399067.1 2364270..2364890(+) (recU) [Bacillus subtilis subsp. subtilis str. 168]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1