Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HIS92_RS13690 Genome accession   NZ_CP051858
Coordinates   2674450..2674734 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2669450..2679734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIS92_RS13655 (HIS92_13695) tmk 2669642..2670268 (+) 627 WP_000677218.1 dTMP kinase -
  HIS92_RS13660 (HIS92_13700) holB 2670304..2671287 (+) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  HIS92_RS13665 (HIS92_13705) - 2671293..2672120 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  HIS92_RS13670 (HIS92_13710) yabA 2672135..2672485 (+) 351 WP_000412064.1 DNA replication initiation control protein YabA -
  HIS92_RS13675 (HIS92_13715) - 2672568..2673308 (+) 741 WP_001055358.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HIS92_RS13680 (HIS92_13720) - 2673295..2673585 (+) 291 WP_000414353.1 GIY-YIG nuclease family protein -
  HIS92_RS13685 (HIS92_13725) rsmI 2673554..2674429 (+) 876 WP_000267816.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HIS92_RS13690 (HIS92_13730) abrB 2674450..2674734 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HIS92_RS13695 (HIS92_13735) metG 2675187..2677196 (+) 2010 WP_003255999.1 methionine--tRNA ligase -
  HIS92_RS13700 (HIS92_13740) - 2677363..2678130 (+) 768 WP_000895845.1 TatD family hydrolase -
  HIS92_RS13705 (HIS92_13745) rnmV 2678346..2678903 (+) 558 WP_000692840.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=440997 HIS92_RS13690 WP_000843036.1 2674450..2674734(-) (abrB) [Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=440997 HIS92_RS13690 WP_000843036.1 2674450..2674734(-) (abrB) [Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851