Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HIS92_RS13490 Genome accession   NZ_CP051858
Coordinates   2637136..2638263 (+) Length   375 a.a.
NCBI ID   WP_000470754.1    Uniprot ID   A0A9W3P6A6
Organism   Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2632136..2643263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIS92_RS13460 (HIS92_13500) spoIIIJ 2632176..2632943 (-) 768 WP_000727741.1 YidC family membrane integrase SpoIIIJ -
  HIS92_RS13465 (HIS92_13505) rnpA 2632996..2633343 (-) 348 WP_000726621.1 ribonuclease P protein component -
  HIS92_RS13470 (HIS92_13510) rpmH 2633420..2633554 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  HIS92_RS13475 (HIS92_13515) dnaA 2634119..2635459 (+) 1341 WP_000428018.1 chromosomal replication initiator protein DnaA -
  HIS92_RS13480 (HIS92_13520) dnaN 2635638..2636783 (+) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  HIS92_RS13485 (HIS92_13525) yaaA 2636911..2637123 (+) 213 WP_000680510.1 S4 domain-containing protein YaaA -
  HIS92_RS13490 (HIS92_13530) recF 2637136..2638263 (+) 1128 WP_000470754.1 DNA replication/repair protein RecF Machinery gene
  HIS92_RS13495 (HIS92_13535) gyrB 2638303..2640225 (+) 1923 WP_000435979.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HIS92_RS13500 (HIS92_13540) gyrA 2640314..2642785 (+) 2472 WP_001282868.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43318.66 Da        Isoelectric Point: 6.7809

>NTDB_id=440995 HIS92_RS13490 WP_000470754.1 2637136..2638263(+) (recF) [Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEEFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=440995 HIS92_RS13490 WP_000470754.1 2637136..2638263(+) (recF) [Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAACTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGAGTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTATATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGGCAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTAATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGCTGGATGATGTTTTATCA
GAATTAGACGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAGGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGATGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.033

98.133

0.648