Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HIS92_RS11795 Genome accession   NZ_CP051858
Coordinates   2277904..2279253 (-) Length   449 a.a.
NCBI ID   WP_002083580.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2272904..2284253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIS92_RS11775 (HIS92_11815) secA 2273232..2275739 (-) 2508 WP_000579374.1 preprotein translocase subunit SecA -
  HIS92_RS11780 (HIS92_11820) raiA 2276012..2276554 (-) 543 WP_000671187.1 ribosome-associated translation inhibitor RaiA -
  HIS92_RS11785 (HIS92_11825) cspC 2276876..2277073 (-) 198 WP_001990088.1 cold shock protein CspC -
  HIS92_RS11790 (HIS92_11830) - 2277200..2277904 (-) 705 WP_003255239.1 ComF family protein -
  HIS92_RS11795 (HIS92_11835) comFA 2277904..2279253 (-) 1350 WP_002083580.1 ATP-dependent helicase ComFA Machinery gene
  HIS92_RS11800 (HIS92_11840) - 2279381..2280766 (-) 1386 WP_000499483.1 C40 family peptidase -
  HIS92_RS11805 (HIS92_11845) - 2280915..2281229 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  HIS92_RS11810 (HIS92_11850) - 2281402..2282244 (-) 843 WP_000684726.1 DegV family protein -
  HIS92_RS11815 (HIS92_11855) - 2282481..2283116 (+) 636 WP_000926669.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51166.05 Da        Isoelectric Point: 10.0230

>NTDB_id=440989 HIS92_RS11795 WP_002083580.1 2277904..2279253(-) (comFA) [Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR]
MLAGKQLLLDELSSDLQRELNDLKRKGEVICVQGVKKKNSKYMCQRCGNVDQRLFASFLCRRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKKLNLLQWNGKLSTGQNLAAQGVVEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADQMLQYAVKQAM
KERAARIYLTATPDETWKRKFRKGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLIHKRIPRVLLQWLQTYLNKKHPIFL
FVPHVRYIEEISLLLKSLNKRIEGVHAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=440989 HIS92_RS11795 WP_002083580.1 2277904..2279253(-) (comFA) [Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR]
ATGCTGGCGGGGAAACAGTTGCTATTAGACGAACTTTCTTCAGATTTACAGAGGGAATTAAATGATTTGAAAAGGAAGGG
AGAGGTCATATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGCGGAAATGTAGATCAGCGGC
TATTTGCGTCGTTTTTATGTAGAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAAATTAAACTTGTTACAGTGGAACGGGAAGTT
GTCTACTGGTCAGAATTTGGCGGCACAAGGTGTTGTAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACCACGCATCAATTATTGCGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAGGGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAAAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGCGGGAATTGGAAAAAAA
GCCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACATACTTAAATAAAAAACATCCTATTTTTTTA
TTTGTCCCCCATGTGCGATATATAGAAGAGATAAGCCTGTTGTTAAAATCATTAAACAAGCGAATTGAAGGTGTACATGC
AGAAGATCCGGGGAGAAAAGAAAAAGTAGCGGCTTTCAGAAAAGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTAGCGGTTTTAGGGGCTGAAGAAGAAATATTCTCAGAAAGTGCACTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCATTTATTTTCACTATGGTAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCCAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(311-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.131

98.441

0.503
  comFA Latilactobacillus sakei subsp. sakei 23K

41.709

88.641

0.37