Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HG549_RS23410 Genome accession   NZ_CP051857
Coordinates   5132789..5133190 (-) Length   133 a.a.
NCBI ID   WP_170033184.1    Uniprot ID   -
Organism   Pseudomonas sp. SK     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5127789..5138190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG549_RS23395 (HG549_23410) - 5129729..5131777 (-) 2049 WP_256666141.1 methyl-accepting chemotaxis protein -
  HG549_RS23400 (HG549_23415) - 5131825..5132379 (-) 555 WP_170033180.1 chemotaxis protein CheW -
  HG549_RS23405 (HG549_23420) pilH 5132376..5132741 (-) 366 WP_170033182.1 twitching motility response regulator PilH -
  HG549_RS23410 (HG549_23425) pilG 5132789..5133190 (-) 402 WP_170033184.1 PleD family two-component system response regulator Regulator
  HG549_RS23415 (HG549_23430) gshB 5133488..5134441 (+) 954 WP_170033186.1 glutathione synthase -
  HG549_RS23420 (HG549_23435) - 5134533..5135438 (+) 906 WP_170033188.1 energy transducer TonB -
  HG549_RS23425 (HG549_23440) - 5135613..5136182 (+) 570 WP_170033190.1 YqgE/AlgH family protein -
  HG549_RS23430 (HG549_23445) ruvX 5136182..5136619 (+) 438 WP_170033192.1 Holliday junction resolvase RuvX -
  HG549_RS23435 (HG549_23450) pyrR 5136669..5137187 (+) 519 WP_170033194.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14606.84 Da        Isoelectric Point: 6.4772

>NTDB_id=440961 HG549_RS23410 WP_170033184.1 5132789..5133190(-) (pilG) [Pseudomonas sp. SK]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAATQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=440961 HG549_RS23410 WP_170033184.1 5132789..5133190(-) (pilG) [Pseudomonas sp. SK]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCGCGCACGATCCGCCGCACCGCACAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCACCAGCCCAGCATCATCTTCG
TCGATGTGCTGATGCCGCGTCTGGACGGCTACCAGACCTGTGCGGTGATAAAGCACAACAGTGCCTTCAAGGACACCCCG
GTGATCCTGCTGTCGTCACGCGATGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGGTCCGACCAGTTCCTGACCAA
GCCGTTCAGCAAGGAAGAACTGCTCGATGCGATCCGTGCCCATGTGCCCGGTTTTGCCGCAACCCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632