Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HG549_RS21635 Genome accession   NZ_CP051857
Coordinates   4727799..4729169 (-) Length   456 a.a.
NCBI ID   WP_170032619.1    Uniprot ID   A0A7Z3CIB8
Organism   Pseudomonas sp. SK     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4722799..4734169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG549_RS21615 (HG549_21630) - 4723116..4723313 (-) 198 WP_029614786.1 YbdD/YjiX family protein -
  HG549_RS21620 (HG549_21635) - 4723327..4725393 (-) 2067 WP_170032614.1 carbon starvation CstA family protein -
  HG549_RS21625 (HG549_21640) - 4725559..4725921 (+) 363 WP_170032616.1 PilZ domain-containing protein -
  HG549_RS21630 (HG549_21645) - 4726185..4727702 (+) 1518 WP_170032618.1 nucleobase:cation symporter-2 family protein -
  HG549_RS21635 (HG549_21650) radA 4727799..4729169 (-) 1371 WP_170032619.1 DNA repair protein RadA Machinery gene
  HG549_RS21640 (HG549_21655) mscL 4729346..4729765 (+) 420 WP_170032621.1 large-conductance mechanosensitive channel protein MscL -
  HG549_RS21645 (HG549_21660) - 4729800..4730576 (-) 777 WP_170032623.1 ferredoxin--NADP reductase -
  HG549_RS21650 (HG549_21665) - 4730791..4731498 (+) 708 WP_170032625.1 autoinducer binding domain-containing protein -
  HG549_RS21655 (HG549_21670) - 4731595..4732719 (+) 1125 WP_170032627.1 methyltransferase -
  HG549_RS21660 (HG549_21675) - 4732852..4733007 (-) 156 WP_016713451.1 DUF2474 domain-containing protein -
  HG549_RS21665 (HG549_21680) cydB 4733017..4734024 (-) 1008 WP_170032629.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48777.21 Da        Isoelectric Point: 6.8985

>NTDB_id=440960 HG549_RS21635 WP_170032619.1 4727799..4729169(-) (radA) [Pseudomonas sp. SK]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESAGAAAPGNGRTGWAGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=440960 HG549_RS21635 WP_170032619.1 4727799..4729169(-) (radA) [Pseudomonas sp. SK]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGTGCGACCTTCCCCAAATGGGCCGGCCAGTGTGGCGAATG
CGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAAAGCGCCGGTGCCGCCGCGCCCGGCAACGGCCGCACTGGCTGGG
CCGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAATCCCGCGTTTCACCACCAGCAGCACGGAA
CTCGACCGCGTGCTGGGCGGCGGCCTGGTGGATGGCTCGGTGGTGCTGATCGGTGGCGACCCCGGTATCGGCAAGTCGAC
CATCCTGTTGCAGACCCTGTGCAACATCGCCGTCGGCATGCCGGCACTGTACGTGACCGGCGAGGAATCGCAGCAGCAGG
TGGCGATGCGCTCGCGGCGCCTGGGCCTGCCGCAGGACCAGCTCAAGGTGATGACCGAAACCTGCATCGAAACCATCATC
GCCACGGCGCGTCAGGAGAAGCCGCGGGTGATGGTCATCGACTCGATCCAGACCATTTTCACCGAGCAGCTGCAATCGGC
ACCTGGCGGCGTGGCCCAGGTGCGCGAAAGTACGGCGTTGCTGGTGCGCTATGCCAAGCAGAGTGGTACGGCAATCTTCC
TGGTCGGCCACGTGACCAAGGAAGGCTCGCTGGCCGGGCCACGGGTTCTCGAGCACATGGTCGACACCGTGCTGTATTTC
GAAGGCGAGTCCGATGGCCGCCTGCGCCTGCTGCGGGCTGTGAAGAACCGCTTCGGTGCTGTCAACGAACTGGGCGTGTT
CGGCATGACCGACCGCGGCCTGAAAGAAGTATCCAACCCGTCGGCGATCTTCCTCAACCGCGCCCAGGAAGAAGTGCCGG
GTAGCGTGGTGATGGCGACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTCGATGACAGCCACCTG
GCCAACCCACGACGGGTGACCCTGGGCCTGGACCAGAACCGCCTGGCCATGTTGCTGGCGGTGTTGCACCGGCATGGTGG
CATTCCAACCCATGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTGCTGGAAACCGCCTCCGACCTGGCGT
TGCTGGCGGCGGTGATGTCGAGCCTGCGCAACCGGCCACTGGCCCATGGCTTGCTGGTGTTTGGCGAGATCGGCCTGTCC
GGCGAAGTGCGGCCGGTACCCAGTGGCCAGGAACGCTTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGGGCCATCGTGCC
CAAGGGCAACGCGCCGAAAGAGCCCCCGGCGGGGCTGCAGGTGATCGCCGTTACCCGGCTGGAGCAGGCCCTGGATGCGC
TGTTCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z3CIB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus mitis SK321

46.272

100

0.463
  radA Streptococcus mitis NCTC 12261

46.053

100

0.461