Detailed information NTG0440948

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HG549_RS03435
• Genome accession: NZ_CP051857
• Coordinates: 761967..762833 (-)
• Length: 288 a.a.
• NCBI ID: WP_170028162.1
• Uniprot ID: A0A7Z3CC16
• Organism: Pseudomonas sp. SK
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 756967..767833

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG549_RS03405 (HG549_03405)	-	757758..759053 (-)	1296	WP_170028158.1	NAD(P)/FAD-dependent oxidoreductase	-
HG549_RS03410 (HG549_03410)	-	759138..759311 (-)	174	WP_013970765.1	DUF3094 family protein	-
HG549_RS03415 (HG549_03415)	-	759445..760074 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
HG549_RS03420 (HG549_03420)	-	760272..760955 (+)	684	WP_170028159.1	energy-coupling factor ABC transporter permease	-
HG549_RS03425 (HG549_03425)	yacG	761147..761347 (-)	201	WP_170028160.1	DNA gyrase inhibitor YacG	-
HG549_RS03430 (HG549_03430)	coaE	761344..761967 (-)	624	WP_170028161.1	dephospho-CoA kinase	-
HG549_RS03435 (HG549_03435)	pilD	761967..762833 (-)	867	WP_170028162.1	A24 family peptidase	Machinery gene
HG549_RS03440 (HG549_03440)	-	762836..764044 (-)	1209	WP_170028163.1	type II secretion system F family protein	-
HG549_RS03445 (HG549_03445)	-	764261..764671 (+)	411	WP_170028164.1	pilin	-
HG549_RS03455 (HG549_03455)	-	764976..765170 (+)	195	Protein_661	integrase arm-type DNA-binding domain-containing protein	-
HG549_RS03460 (HG549_03460)	-	765471..765770 (-)	300	WP_170028165.1	hypothetical protein	-
HG549_RS26185 (HG549_03465)	-	765754..766395 (-)	642	WP_218576023.1	nucleotidyltransferase domain-containing protein	-
HG549_RS03470 (HG549_03470)	-	766392..767201 (-)	810	WP_170028166.1	pentapeptide repeat-containing protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32010.27 Da
• Isoelectric Point: 8.2294

>NTDB_id=440948 HG549_RS03435 WP_170028162.1 761967..762833(-) (pilD) [Pseudomonas sp. SK]
MTSWTLLAEQPAYFLTLATLLGLLVGSFLNVLVYRLPIMLEQQWQREAQEVLGLPTTAQERFDLWLPPSRCPHCGHRIRA
WENIPLISYLALRGRCSACRTRISPRYPLVEVASALLSLVVAWHFGVSLEAVLALPLTWCLLALSLIDARHQLLPDVLVL
PMLWLGLIVNAFGLYVPLAGALWGAVIGYLSLWTVYWLFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSLVGA
LVGLCLLRLRRHALGTAMPFGPYLAIAGWIAVLWGDEIYASYLQLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=440948 HG549_RS03435 WP_170028162.1 761967..762833(-) (pilD) [Pseudomonas sp. SK]
ATGACTTCATGGACTTTACTGGCGGAGCAGCCAGCGTACTTCCTCACCCTGGCCACGCTGCTCGGCCTGCTGGTGGGCAG
TTTCCTCAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCAGCAATGGCAGCGTGAGGCGCAGGAGGTGTTGGGGC
TGCCGACCACGGCGCAGGAACGCTTCGACCTGTGGCTCCCACCCTCGCGTTGCCCGCATTGCGGCCATCGAATCCGCGCG
TGGGAGAACATTCCGCTGATCAGCTATCTGGCCTTGCGCGGGCGTTGTTCAGCCTGCAGGACCCGCATCAGCCCGCGCTA
TCCGCTGGTGGAGGTGGCCAGCGCGCTGCTTTCGCTGGTGGTGGCCTGGCACTTTGGTGTTTCGCTCGAGGCCGTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCAGGCACCAGCTGTTGCCGGATGTGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTCGGCCTCTATGTGCCCCTGGCCGGGGCGCTGTGGGGGGCGGTGAT
CGGTTACCTCAGCCTGTGGACGGTGTACTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACTTCA
AGCTGATGGCACTGATCGGGGCCTGGGGGGGCTGGCAGGTATTGCCGTTGACGCTGCTGCTGTCGTCGCTGGTCGGGGCG
CTGGTGGGGCTGTGCCTGCTGCGCCTGCGCCGGCATGCCTTGGGCACGGCGATGCCGTTTGGGCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACCTGCAACTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

3D structure

• AlphaFold DB: A0A7Z3CC16

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.069	96.181	0.51
pilD	Acinetobacter baumannii D1279779	50.89	97.569	0.497
pilD	Acinetobacter nosocomialis M2	50.89	97.569	0.497
pilD	Vibrio campbellii strain DS40M4	49.281	96.528	0.476
pilD	Neisseria gonorrhoeae MS11	48.327	93.403	0.451