Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   IOD14_RS40670 Genome accession   NZ_CP063808
Coordinates   9079538..9080536 (-) Length   332 a.a.
NCBI ID   WP_123989881.1    Uniprot ID   -
Organism   Streptomyces sp. A2-16     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 9074538..9085536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD14_RS40650 (IOD14_40650) pfkB 9074629..9075576 (-) 948 WP_123989878.1 1-phosphofructokinase -
  IOD14_RS40655 (IOD14_40655) - 9075573..9076334 (-) 762 WP_123989879.1 DeoR/GlpR family DNA-binding transcription regulator -
  IOD14_RS40660 (IOD14_40660) - 9076512..9078038 (-) 1527 WP_123989880.1 MFS transporter -
  IOD14_RS40665 (IOD14_40665) - 9078101..9079072 (+) 972 WP_123992697.1 YafY family protein -
  IOD14_RS40670 (IOD14_40670) rpoS 9079538..9080536 (-) 999 WP_123989881.1 sigma-70 family RNA polymerase sigma factor Regulator
  IOD14_RS40675 (IOD14_40675) - 9080730..9081260 (+) 531 WP_123989882.1 GNAT family N-acetyltransferase -
  IOD14_RS40680 (IOD14_40680) - 9081277..9082068 (-) 792 WP_123989883.1 class III extradiol ring-cleavage dioxygenase -
  IOD14_RS40685 (IOD14_40685) - 9082206..9082715 (+) 510 WP_123989884.1 MarR family transcriptional regulator -
  IOD14_RS40690 (IOD14_40690) - 9082821..9084362 (-) 1542 WP_123989885.1 MFS transporter -
  IOD14_RS40695 (IOD14_40695) - 9084459..9085103 (-) 645 WP_123989886.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37181.89 Da        Isoelectric Point: 5.0538

>NTDB_id=440923 IOD14_RS40670 WP_123989881.1 9079538..9080536(-) (rpoS) [Streptomyces sp. A2-16]
MATRAVARRKSATGGSTDAARSVRANGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQVLDGFEEAKAD
ATREELEALVEESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELGSNAERVTDVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARSTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=440923 IOD14_RS40670 WP_123989881.1 9079538..9080536(-) (rpoS) [Streptomyces sp. A2-16]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGGGTCGACCGACGCGGCCCGCAGTGTTCGCGCCAATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGATCATCGAGGCGGGTGTGTTCGCCCGACAGGTCCTCGACGGGTTCGAGGAGGCCAAGGCGGAC
GCCACCCGCGAGGAGCTGGAGGCGTTGGTGGAGGAGAGCGAGCGCGCCAAGGACGTGTTCATCCGCTCCAACCTCCGCCT
GGTCGTCGCCGTGGCCCGCCGCTACCCCCGCAGCGGACTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCCGGTCTGG
TCCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGCTCCATCGCCGACCAGTCCCGCACCATCCGGCTGCCCGTCCACCTCGTGGAGGAGCTGGGCCGCATCCGCCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGACCCGGAGCCCGCGGAGATCGCCGCCGAGCTCGGCTCCAACGCGGAGC
GCGTGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTC
GGTGACCTCCTGGAGGACACCTCGGCGGTCTCGCCGGAGCAGTCGGTGCTGACGCTGCTGCGCAGCGAGGAACTGGACGA
CCTCATCGGCCGCCTCGACCAGCGCACCGCCTCCATCATCAAGATGCGGTACGGCATCGAGGACGGACGCGAGCGCACCC
TGACCGAGGTCGGCAAGGAGCACGGACTCACGCGTGAGCGGATCCGGCAGATCGAGAAGCACGCTCTGCTGGAGCTGAAG
AAGCTGGCGCGCAGCACCGGGTTCGACGCGGCGGCGTAG

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

38.871

96.084

0.373