Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   IOD14_RS36215 Genome accession   NZ_CP063808
Coordinates   8059572..8061500 (+) Length   642 a.a.
NCBI ID   WP_212672507.1    Uniprot ID   -
Organism   Streptomyces sp. A2-16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 8054572..8066500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD14_RS36180 (IOD14_36180) - 8054650..8055078 (-) 429 WP_123988989.1 hypothetical protein -
  IOD14_RS36200 (IOD14_36200) - 8055786..8056091 (+) 306 WP_123988990.1 YtxH domain-containing protein -
  IOD14_RS36205 (IOD14_36205) - 8056232..8057668 (+) 1437 WP_174269118.1 FGGY family carbohydrate kinase -
  IOD14_RS36210 (IOD14_36210) rcrP 8057839..8059572 (+) 1734 WP_123988991.1 ABC transporter ATP-binding protein Regulator
  IOD14_RS36215 (IOD14_36215) rcrQ 8059572..8061500 (+) 1929 WP_212672507.1 ABC transporter ATP-binding protein Regulator
  IOD14_RS36220 (IOD14_36220) - 8061534..8062823 (-) 1290 WP_212672508.1 RNA polymerase sigma factor -
  IOD14_RS36225 (IOD14_36225) dnaG 8062925..8064832 (-) 1908 WP_212672509.1 DNA primase -
  IOD14_RS36230 (IOD14_36230) - 8064862..8066127 (-) 1266 WP_212672510.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69905.39 Da        Isoelectric Point: 5.5658

>NTDB_id=440913 IOD14_RS36215 WP_212672507.1 8059572..8061500(+) (rcrQ) [Streptomyces sp. A2-16]
MAGPMGRMMAGGGPETRSIDFKVSGRRLLAQFKPERFTLYAMLACVVVSVGLNVVGPKILGEATDLVFAGIIGRQMPAGA
SKEEVLAQMRARGEGQVADMLRSTDFTPGEGIDFTAVGHVLLFAVGVFLIAGLLMAVATRLVNRTVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSFVVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHNLVKVFGRQDESAAQFAEQNEALYEAGFKAQFNSGVMQPLMMFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPQVPEKPEELRGRVALE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPEGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGTHTDLLEAGGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=440913 IOD14_RS36215 WP_212672507.1 8059572..8061500(+) (rcrQ) [Streptomyces sp. A2-16]
ATGGCCGGGCCCATGGGGCGCATGATGGCAGGCGGCGGTCCCGAGACCCGCTCGATCGACTTCAAGGTGTCCGGAAGGCG
GCTGCTCGCCCAGTTCAAGCCGGAACGCTTCACCCTCTACGCGATGCTGGCCTGCGTGGTCGTCAGCGTCGGCCTGAACG
TGGTCGGGCCGAAGATCCTCGGCGAGGCCACCGACCTGGTCTTCGCGGGCATCATCGGACGGCAGATGCCCGCCGGGGCG
AGCAAGGAGGAGGTGCTCGCCCAGATGCGGGCCCGCGGCGAGGGTCAGGTCGCCGACATGCTCCGCAGCACCGACTTCAC
CCCCGGCGAGGGCATCGACTTCACCGCCGTGGGACATGTCCTGCTGTTCGCGGTCGGGGTGTTCCTGATCGCCGGGCTGC
TGATGGCGGTGGCGACGCGGCTGGTCAACCGGACCGTCAACCGCACGATGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGTTGTCGTACTTCGACAAGCGCCAGCGCGGCGAGGTCCTGTCCCGGGCGACGAACGACATCGACAA
CATCGGGCAGACCCTCCAGCAGTCGATGGGCCAGCTCATCAACTCCCTGCTCACCATCATCGGGGTGCTCGCGATGATGT
TCTGGGTGTCCTGGCTGCTGGCGCTGGTCGCGCTGGTCACGGTGCCGCTGTCGTTCGTCGTCGCCACGCGCGTGGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACAGGGCA
CAACCTGGTGAAGGTGTTCGGGCGTCAGGACGAGTCGGCCGCGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTCTCGAACATCAACTACGTGCTGGTGGCG
GTCGTCGGCGGGCTGCGGGTCGCGTCGGGTTCGCTGTCCATCGGGGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTT
CTCGATGCCGCTCACGCAGGTCGCGTCCATGGCGAACCTCGTGCAGTCGGGTGTCGCCTCGGCCGAGCGGATCTTCGAAC
TCCTGGACGCGGAGGAGCAGGAGGCGGATCCCCAGGTCCCCGAGAAGCCGGAGGAGCTGCGCGGACGGGTCGCCCTGGAG
CACGTGTCCTTCCGCTACGACCCCGAGAAGCCGCTCATCGAGGACCTCTCGCTGAAGGTCGAACCCGGGCACACGGTCGC
GATCGTCGGCCCGACCGGTGCCGGCAAGACGACCCTGGTCAACCTGCTGATGCGGTTCTACGACGTCTCGGGCGGGCGGA
TCACCCTCGACGGCGTGGACATCGCGAGGATGTCCCGGGACGAACTGCGCGCCGGGATCGGCATGGTCCTGCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCCTCGCGCGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCGGCCCACGCGGACCGGTTCGTGCGGACCCTGCCCGAGGGCTACGACACCGTCATCGACGACGAGGGCAGCG
GGGTGAGCGCGGGCGAGAAGCAGCTCATCACGATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTCCTGGACGAG
GCGACGAGTTCGGTCGACACCCGTACCGAGGTACTGATCCAGAAGGCGATGGCCAAACTGGCGCACGGGCGCACGTCGTT
CGTGATCGCGCACCGCCTGTCGACCATCCGGGACGCGGACACCATCCTCGTGATGGAGAACGGCTCGATCGTCGAACAGG
GCACGCACACGGACCTGCTGGAGGCCGGCGGGGCGTACGCGCGCCTGTACAAGGCACAGTTCGCGCAGGCGGTGGCGGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.129

96.262

0.386