Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   IOD14_RS36210 Genome accession   NZ_CP063808
Coordinates   8057839..8059572 (+) Length   577 a.a.
NCBI ID   WP_123988991.1    Uniprot ID   -
Organism   Streptomyces sp. A2-16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 8052839..8064572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD14_RS36170 (IOD14_36170) - 8052958..8053719 (-) 762 WP_123988987.1 IclR family transcriptional regulator -
  IOD14_RS36175 (IOD14_36175) - 8053780..8054286 (-) 507 WP_212672506.1 flavin reductase family protein -
  IOD14_RS36180 (IOD14_36180) - 8054650..8055078 (-) 429 WP_123988989.1 hypothetical protein -
  IOD14_RS36200 (IOD14_36200) - 8055786..8056091 (+) 306 WP_123988990.1 YtxH domain-containing protein -
  IOD14_RS36205 (IOD14_36205) - 8056232..8057668 (+) 1437 WP_174269118.1 FGGY family carbohydrate kinase -
  IOD14_RS36210 (IOD14_36210) rcrP 8057839..8059572 (+) 1734 WP_123988991.1 ABC transporter ATP-binding protein Regulator
  IOD14_RS36215 (IOD14_36215) rcrQ 8059572..8061500 (+) 1929 WP_212672507.1 ABC transporter ATP-binding protein Regulator
  IOD14_RS36220 (IOD14_36220) - 8061534..8062823 (-) 1290 WP_212672508.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62704.74 Da        Isoelectric Point: 5.1493

>NTDB_id=440912 IOD14_RS36210 WP_123988991.1 8057839..8059572(+) (rcrP) [Streptomyces sp. A2-16]
MLIRLLRTYLRPYKKPIAFLVLLQFLQTCATLYLPTLNADIIDNGVVNGDTGYILSFGALMIGISLAQVVCNIGAVFYGA
RTAAALGRDLRASVFDRVQSFSAREVGQFGAPTLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPTLGICVTLIVRRLRPLFRSMQVRLDTVNRVLREQISGNRVIRAFVRDEYEEERFRKANTDLTDISLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PVAPVTELRRHGHLEIRGGGFRYPGAEEPVLKAIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGTEVS
TIDPKLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVERLENGLDSPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETSEATVVIVAQRVATIRDADRIVVLDEGRVVGTGTHRELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=440912 IOD14_RS36210 WP_123988991.1 8057839..8059572(+) (rcrP) [Streptomyces sp. A2-16]
GTGCTCATACGACTTCTGCGGACCTACCTCAGGCCCTACAAGAAACCCATCGCCTTCCTGGTGCTGCTGCAGTTCCTCCA
GACCTGCGCCACCCTCTACCTGCCCACGCTCAACGCGGACATCATCGACAACGGTGTCGTGAACGGCGACACCGGCTACA
TCCTGAGCTTCGGCGCTCTGATGATCGGCATCTCGCTGGCGCAGGTGGTGTGCAACATCGGGGCCGTGTTCTACGGCGCC
AGGACCGCCGCCGCGCTCGGCCGGGACCTGCGGGCGTCGGTCTTCGACCGGGTGCAGTCGTTCTCGGCACGCGAGGTGGG
CCAGTTCGGCGCGCCCACGCTGATCACCCGCACGACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCCATCATGTGTGTCGGCGGCATCGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTGGTGGCCGTGGTGCCGACGCTGGGCATCTGTGTGACGTTGATCGTACGGCGGCTGCGGCCGCTGTTCCGGTCCATGCA
GGTGCGTCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCAGCGGCAACCGGGTCATCCGGGCGTTCGTGCGCGACG
AGTACGAGGAGGAGCGCTTCCGGAAGGCGAACACCGACCTCACGGACATCTCCCTCAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCCGTGGTCATGACGACGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCTCGTCGAGCGTGGTCCCG
CCGGTGGCGCCCGTCACCGAGCTGCGGCGGCACGGACATCTGGAGATCCGGGGCGGGGGCTTCCGCTACCCCGGTGCCGA
GGAGCCCGTGCTCAAGGCGATCGACCTGGTGGCCCGGCCCGGCGAGGTGACGGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTCGGGCTCGTCCCCCGGCTGTTCGACGCGACCGACGGCGAGGTGCTCGTCGACGGGACCGAGGTGTCG
ACCATCGATCCGAAGCTGCTCGCGAAGACCGTCGGGCTCGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACGGTCGCCAC
CAACCTCCGCTACGGCAATCCGGACGCCACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TCGAACGGTTGGAGAACGGGCTCGACTCCCCCGTCGCCCAGGGCGGCACCAACGTCTCCGGCGGGCAGCGCCAGCGTCTC
GCCATCGCGCGCACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCCCTGCGCGCGGCGCTCGCCGAGGAGACCTCGGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCCACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGGCGGGTCGTCGGCACCGGCACCCACCGCGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.551

100

0.397