Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   IOD14_RS30000 Genome accession   NZ_CP063808
Coordinates   6686673..6688028 (-) Length   451 a.a.
NCBI ID   WP_123987944.1    Uniprot ID   -
Organism   Streptomyces sp. A2-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6681673..6693028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD14_RS29980 (IOD14_29980) - 6682646..6682972 (-) 327 WP_123987941.1 hypothetical protein -
  IOD14_RS29985 (IOD14_29985) - 6682983..6683417 (-) 435 WP_174269066.1 DUF948 domain-containing protein -
  IOD14_RS29990 (IOD14_29990) - 6683569..6685731 (+) 2163 WP_174269067.1 AAA family ATPase -
  IOD14_RS29995 (IOD14_29995) rpsD 6685762..6686376 (-) 615 WP_123987943.1 30S ribosomal protein S4 -
  IOD14_RS30000 (IOD14_30000) rarA 6686673..6688028 (-) 1356 WP_123987944.1 replication-associated recombination protein A Machinery gene
  IOD14_RS30005 (IOD14_30005) - 6688075..6688737 (-) 663 WP_123987945.1 vitamin K epoxide reductase family protein -
  IOD14_RS30010 (IOD14_30010) - 6688883..6689749 (+) 867 WP_123987946.1 ABC transporter ATP-binding protein -
  IOD14_RS30015 (IOD14_30015) - 6689746..6690591 (+) 846 WP_212672040.1 ABC transporter permease -
  IOD14_RS30020 (IOD14_30020) - 6690549..6691787 (+) 1239 WP_249126101.1 sensor histidine kinase -
  IOD14_RS30025 (IOD14_30025) vraR 6691784..6692410 (+) 627 WP_212672041.1 response regulator transcription factor Regulator
  IOD14_RS30030 (IOD14_30030) - 6692420..6692956 (-) 537 WP_249126102.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48405.84 Da        Isoelectric Point: 6.1088

>NTDB_id=440901 IOD14_RS30000 WP_123987944.1 6686673..6688028(-) (rarA) [Streptomyces sp. A2-16]
MEPDLFTAAAEERQEKDPAGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIEGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SIISPLLSRSLLLTLEPLTDDDLRGLLRRALSDERGLRDAVALPEDTEDHLLRIAGGDARRALTALEAAAGAALDKGEPE
ISLTTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PTAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAAMEDVRKGLAGPVPPHLRDGHYKGAAKLGHAQGYVY
PHDLPEGIAEQQYAPDAIKDREYYEPTRHGAEARYADAVEWTRKHLGRKRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=440901 IOD14_RS30000 WP_123987944.1 6686673..6688028(-) (rarA) [Streptomyces sp. A2-16]
GTGGAGCCCGATCTGTTCACCGCGGCGGCGGAAGAGCGCCAGGAGAAGGACCCGGCCGGCAGCCCCCTGGCGGTCCGGAT
GCGCCCGCGCACCCTCGACGAGGTGGTGGGCCAGCAGCACCTGCTCAAGCCGGGCTCACCGCTGCGCCGACTGGTCGGCG
AGGGCAGCGGCGGCCCCGCCGGACCCTCCTCGGTGATCCTCTGGGGCCCGCCCGGCACCGGCAAGACGACTCTGGCCTAC
GTCGTCTCCAAGGCGACGAACAAGCGCTTCGTGGAGCTCTCCGCGATCACCGCCGGCGTCAAGGAGGTCCGCGCGGTCAT
CGAGGGCGCACGCCGCGCCACCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTTCCCGCAGTCGAGAACCGCTGGGTGACCCTGATCGCGGCGACCACCGAGAACCCGTACTTC
TCGATCATCTCCCCGCTGCTGTCCCGGTCGCTGCTGCTCACCCTCGAACCCCTCACCGACGACGACCTCAGAGGGCTCCT
GAGGCGGGCGCTGAGCGACGAGCGCGGTCTCAGGGACGCCGTCGCCCTCCCCGAGGACACCGAGGACCACCTCCTGCGGA
TCGCCGGAGGTGACGCCCGCCGCGCCCTGACCGCCCTGGAGGCCGCGGCCGGAGCCGCGCTCGACAAGGGCGAGCCGGAG
ATCTCCCTCACCACACTGGAGGAGACGGTCGACCGCGCGGCCGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCCAGCGCCCTCATCAAGTCCATCAGGGGCTCCGACGTGGACGCGGCCCTGCACTACCTGGCCCGCATGATCGAGGCCG
GCGAGGACCCCCGCTTCATCGCCCGCCGCCTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCGGACCCCAACGCCCTG
CCCACAGCCGTGGCCGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCCGAGGCCGCCCTGACGCTGAGCCACGCCACCAT
CGCGCTCGCCCTGGCCCCGAAGTCCAACGCCGCGACCACGGCGATCGGCGCCGCCATGGAGGACGTACGCAAGGGACTGG
CCGGTCCCGTGCCGCCGCACCTGCGCGACGGGCACTACAAGGGCGCCGCCAAGCTCGGGCACGCCCAGGGGTACGTCTAC
CCGCACGACCTGCCCGAGGGCATCGCCGAGCAGCAGTACGCCCCGGACGCCATCAAGGACCGCGAGTACTACGAACCCAC
CCGGCACGGCGCCGAGGCCCGGTACGCGGACGCGGTGGAGTGGACCAGGAAGCACCTCGGTCGGAAGCGGTCCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

AAA C-terminal domain (AAA_assoc_2)

(200-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.88

96.009

0.421