Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HH195_RS11045 Genome accession   NZ_CP051754
Coordinates   2369693..2371489 (-) Length   598 a.a.
NCBI ID   WP_196371123.1    Uniprot ID   -
Organism   Sarcina sp. JB2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2364693..2376489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH195_RS11025 (HH195_11025) - 2365490..2366344 (+) 855 WP_196371121.1 Cof-type HAD-IIB family hydrolase -
  HH195_RS11030 (HH195_11030) - 2366394..2367242 (+) 849 WP_055259034.1 MurR/RpiR family transcriptional regulator -
  HH195_RS11035 (HH195_11035) - 2367335..2367799 (+) 465 WP_195925787.1 pyridoxamine 5'-phosphate oxidase family protein -
  HH195_RS11040 (HH195_11040) rcrQ 2367933..2369693 (-) 1761 WP_196371122.1 ABC transporter ATP-binding protein Regulator
  HH195_RS11045 (HH195_11045) rcrP 2369693..2371489 (-) 1797 WP_196371123.1 ABC transporter ATP-binding protein Regulator
  HH195_RS11050 (HH195_11050) - 2371664..2372722 (-) 1059 WP_243278504.1 HAMP domain-containing sensor histidine kinase -
  HH195_RS11055 (HH195_11055) - 2372706..2373392 (-) 687 WP_055259050.1 response regulator transcription factor -
  HH195_RS11060 (HH195_11060) - 2373644..2374849 (-) 1206 WP_196371124.1 macrolide family glycosyltransferase -
  HH195_RS11065 (HH195_11065) - 2375026..2375565 (-) 540 WP_055259055.1 TetR/AcrR family transcriptional regulator -
  HH195_RS11070 (HH195_11070) - 2375735..2376178 (-) 444 WP_058993544.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 66144.73 Da        Isoelectric Point: 5.4656

>NTDB_id=440872 HH195_RS11045 WP_196371123.1 2369693..2371489(-) (rcrP) [Sarcina sp. JB2]
MLKIFKNFKGKEWLLLSISVVFIVLQVWLDLRLPDYMSDITRLVQTQGSEMSEILTAGGWMLLCALGSLIASVIVAALAA
KIASNFSATLRSKLYDKVQDFSMEEINNFSTASLITRSTNDVTQVQTFIVIGLQLLIKAPILAVWAVLKITGKNWELSLT
TGIAVLILLIIVGICIAIALPRFAKLQKLTDNLNRIARENLSGISVTRAYNAEKYQEDKFEEANSELTSVNLVANRVMAT
LLPSISFIMSGLTLAIYWVGAVLIQNADITSRMGLFSDVVVFSSYAMQVVMAFMMLVIVFILMPRASVAAKRINEVLDAE
IKIKNGTTSQEIVSAVGEIEFKNVSFKYPDADDYVIKDISFKVNRGETVAFIGATGSGKSTLINLIPRFYDATEGEVLVN
GMNVKEYDQKHLRNKLGYVPQKVTLFEGSIESNIAFGDNGRSKISKDDVVYGIYGAQATEFVERLDGQYEAHVSQGGNNF
SGGQKQRLSIARAISRNPEVLIFDDSFSALDYKTDSKLRKFLKHESVGTTTIVVAQRISSIKEADKIIVLDNGLIVGMGK
HDDLMKECNVYQEIAYSQLSKEELSIVKEVEVLEEEAI

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=440872 HH195_RS11045 WP_196371123.1 2369693..2371489(-) (rcrP) [Sarcina sp. JB2]
ATGTTAAAGATATTTAAAAATTTTAAAGGCAAAGAATGGCTACTCTTAAGTATTAGTGTTGTATTTATAGTGTTGCAAGT
GTGGCTAGATTTAAGATTGCCAGATTACATGAGCGATATTACAAGACTTGTGCAAACACAAGGAAGTGAAATGAGTGAGA
TTTTAACCGCAGGTGGATGGATGCTTCTTTGTGCTTTAGGTAGTTTAATTGCATCAGTTATTGTTGCTGCACTTGCTGCA
AAAATAGCTTCAAATTTTTCAGCTACGCTTAGGTCTAAATTGTATGACAAAGTTCAGGATTTTTCCATGGAAGAAATAAA
TAATTTTTCAACAGCAAGCTTAATAACACGTTCGACAAATGATGTAACTCAGGTACAAACATTTATAGTTATTGGCTTAC
AGTTATTAATAAAAGCACCTATATTAGCTGTTTGGGCTGTTTTAAAGATTACAGGGAAGAATTGGGAGCTATCTTTAACA
ACAGGAATAGCTGTTTTAATATTATTAATTATTGTTGGTATATGCATTGCAATAGCTCTTCCAAGGTTTGCAAAACTTCA
AAAATTAACTGATAATTTAAACCGTATTGCAAGAGAAAATCTTTCAGGTATTTCTGTTACTCGTGCATATAATGCAGAAA
AATATCAAGAAGATAAATTTGAAGAGGCAAACTCAGAACTTACAAGTGTTAACTTAGTTGCTAACCGTGTTATGGCAACG
TTACTGCCAAGCATTAGCTTTATAATGAGTGGATTAACTCTTGCAATATATTGGGTTGGAGCAGTGCTTATTCAAAATGC
GGATATAACAAGTAGAATGGGATTATTTTCAGACGTTGTCGTTTTCTCATCATATGCAATGCAAGTTGTCATGGCATTTA
TGATGCTTGTTATAGTATTTATTTTAATGCCTCGTGCATCAGTTGCAGCAAAGAGAATTAATGAGGTATTAGATGCAGAA
ATTAAGATAAAAAATGGGACAACTTCACAAGAAATTGTTAGTGCAGTTGGAGAAATAGAATTCAAAAATGTTAGTTTTAA
GTATCCAGATGCTGATGATTATGTGATAAAAGATATTAGTTTTAAGGTAAATAGAGGAGAAACTGTGGCATTTATTGGTG
CAACAGGTTCTGGAAAGAGTACATTAATTAATCTTATTCCTAGATTTTATGATGCAACAGAGGGTGAGGTTTTAGTTAAT
GGTATGAATGTAAAAGAATATGATCAAAAACATCTTAGAAATAAGTTAGGTTATGTACCTCAAAAGGTAACTTTATTTGA
AGGAAGTATTGAATCTAATATAGCATTTGGTGATAATGGAAGGTCAAAAATATCAAAAGATGATGTTGTTTATGGAATTT
ATGGAGCTCAAGCAACTGAATTTGTTGAGAGGTTAGATGGTCAATATGAGGCTCATGTTTCACAAGGGGGAAATAATTTC
TCTGGTGGACAAAAACAACGTTTATCAATAGCTAGAGCGATATCCCGTAATCCAGAGGTTTTAATTTTTGACGATTCATT
TTCTGCTTTAGATTATAAAACTGATAGCAAACTTCGTAAGTTTTTAAAGCATGAAAGTGTTGGAACAACAACTATAGTAG
TAGCTCAAAGGATTAGCAGTATAAAAGAGGCTGATAAAATAATTGTATTAGATAATGGACTAATTGTTGGTATGGGAAAA
CATGATGATTTAATGAAAGAGTGTAATGTATATCAAGAAATTGCTTATTCACAACTTTCAAAAGAAGAATTAAGTATAGT
AAAAGAGGTAGAAGTTTTAGAAGAGGAGGCTATATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50

99.666

0.498