Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HH195_RS11040 Genome accession   NZ_CP051754
Coordinates   2367933..2369693 (-) Length   586 a.a.
NCBI ID   WP_196371122.1    Uniprot ID   -
Organism   Sarcina sp. JB2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2362933..2374693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH195_RS11010 (HH195_11010) - 2363395..2363775 (-) 381 WP_196371118.1 nuclear transport factor 2 family protein -
  HH195_RS11015 (HH195_11015) - 2364084..2364278 (+) 195 WP_196371119.1 hypothetical protein -
  HH195_RS11020 (HH195_11020) - 2364396..2365277 (-) 882 WP_196371120.1 PHP domain-containing protein -
  HH195_RS11025 (HH195_11025) - 2365490..2366344 (+) 855 WP_196371121.1 Cof-type HAD-IIB family hydrolase -
  HH195_RS11030 (HH195_11030) - 2366394..2367242 (+) 849 WP_055259034.1 MurR/RpiR family transcriptional regulator -
  HH195_RS11035 (HH195_11035) - 2367335..2367799 (+) 465 WP_195925787.1 pyridoxamine 5'-phosphate oxidase family protein -
  HH195_RS11040 (HH195_11040) rcrQ 2367933..2369693 (-) 1761 WP_196371122.1 ABC transporter ATP-binding protein Regulator
  HH195_RS11045 (HH195_11045) rcrP 2369693..2371489 (-) 1797 WP_196371123.1 ABC transporter ATP-binding protein Regulator
  HH195_RS11050 (HH195_11050) - 2371664..2372722 (-) 1059 WP_243278504.1 HAMP domain-containing sensor histidine kinase -
  HH195_RS11055 (HH195_11055) - 2372706..2373392 (-) 687 WP_055259050.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64774.34 Da        Isoelectric Point: 5.8956

>NTDB_id=440871 HH195_RS11040 WP_196371122.1 2367933..2369693(-) (rcrQ) [Sarcina sp. JB2]
MDKKKETEKNLGKLIVYCKSYMPIIVIALTSAVIATILSLLGPDKLSEMTDTITNGILTSIDMEKITSIGLILVIIYGAS
VILNLTQGYIMATVTQRITKNLRKDISKKINKLPMWYYNNNTTGDLLSRVTNDVDTIGQALNQSTGTLISAICLFLGSLV
MMLKTNFIMAITAVMSTIIGFALMSVIMKKSQKYFTNQQEYLGKINGHIEEVYSGHTVIKAFNAEEQMRHTFKSLNYSLK
DSAFKAQFLSGLMMPIMTFIGNLGYVAVCIVGAILAMNGSISFGIIVAFIMYVRYFTQPLGQIAQGVQSMQSAAAASHRV
FEFLEAEEMEDESHKALALENADGKVEFKNVKFGYKGTGKIIINNFSAVAKPGQKIAIVGPTGAGKSTLVNLLMRFNEIN
SGEILIDDVPISDLTRENIHDLFCMVLQDTWLFEGSIRENLVYNKTDVPDEVIKKACKAVGLDSFIENLHDGYDTVLSDK
VNLSIGQKQQLTIARAMIKDSPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADIILVLKDGDILE
SGNHEELLEKGGFYAELYNSQFEEAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=440871 HH195_RS11040 WP_196371122.1 2367933..2369693(-) (rcrQ) [Sarcina sp. JB2]
ATGGATAAAAAGAAAGAAACAGAAAAAAATTTGGGCAAACTTATAGTTTATTGCAAAAGTTATATGCCTATAATAGTTAT
AGCATTAACAAGTGCAGTAATTGCAACTATTTTATCCTTATTAGGTCCTGATAAGCTTTCTGAAATGACAGATACTATAA
CTAATGGAATATTAACTAGTATTGACATGGAAAAGATAACTTCAATAGGATTAATTCTTGTTATTATATATGGAGCAAGT
GTTATATTAAACTTAACTCAAGGATATATAATGGCAACTGTTACTCAAAGAATCACTAAAAATTTAAGAAAAGATATTTC
TAAAAAAATAAATAAACTTCCAATGTGGTATTATAACAATAATACCACAGGAGATTTACTTTCTCGTGTTACAAATGATG
TAGATACAATTGGACAAGCTTTAAATCAAAGCACAGGAACTTTGATAAGTGCGATATGTTTATTTTTAGGTTCTTTAGTT
ATGATGTTAAAAACGAATTTTATTATGGCAATAACTGCTGTTATGTCAACAATTATTGGGTTTGCACTAATGTCAGTAAT
CATGAAGAAGTCTCAAAAATATTTTACTAATCAACAGGAATATTTGGGAAAGATAAATGGGCATATTGAAGAAGTATATT
CAGGGCATACTGTAATTAAGGCTTTTAATGCAGAAGAACAAATGAGGCATACATTTAAAAGTTTAAATTATAGTCTTAAA
GATAGTGCTTTTAAAGCACAATTCCTTTCAGGACTTATGATGCCTATTATGACTTTTATAGGTAATTTAGGATATGTTGC
AGTTTGTATAGTAGGTGCAATACTTGCTATGAATGGAAGTATATCTTTCGGAATAATTGTAGCATTTATTATGTATGTTA
GATATTTTACACAGCCACTTGGTCAAATTGCACAAGGGGTTCAAAGTATGCAATCAGCAGCTGCTGCAAGTCACAGAGTG
TTTGAATTTTTAGAGGCTGAAGAAATGGAAGATGAGAGTCATAAAGCTTTAGCTCTTGAAAATGCTGATGGAAAAGTTGA
ATTTAAAAATGTTAAATTTGGATATAAGGGTACAGGTAAAATAATAATAAATAATTTTTCAGCTGTTGCAAAACCTGGAC
AAAAGATTGCAATTGTTGGGCCAACAGGAGCAGGTAAGTCAACCTTAGTAAACTTACTTATGAGGTTTAATGAAATAAAT
AGTGGTGAAATATTAATTGATGATGTACCTATAAGTGATTTAACAAGAGAAAATATCCATGATTTATTCTGTATGGTGCT
TCAAGATACTTGGTTATTTGAAGGAAGTATTAGAGAAAATTTAGTATATAACAAAACTGATGTGCCAGATGAGGTAATTA
AAAAAGCATGTAAGGCGGTAGGATTAGATAGTTTTATAGAAAATTTACATGATGGATATGATACTGTTTTAAGTGATAAA
GTTAATCTATCAATAGGACAAAAACAACAATTAACCATTGCAAGGGCAATGATTAAGGATTCACCAATGTTAATCTTAGA
TGAAGCAACAAGTTCAGTAGATACAAGAACCGAGCTTTTAATTCAACAAGCTATGGATAAACTTATGGAGGGAAGAACTT
CTTTTGTTATAGCACATAGACTTTCAACAATTAAAAATGCTGATATTATACTTGTATTAAAGGATGGAGATATTTTAGAA
AGTGGAAACCATGAGGAATTGCTTGAAAAGGGTGGTTTTTACGCAGAATTATATAATAGCCAATTTGAAGAGGCTTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.651

99.659

0.555