Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HH195_RS03205 Genome accession   NZ_CP051754
Coordinates   735926..737755 (+) Length   609 a.a.
NCBI ID   WP_196371547.1    Uniprot ID   -
Organism   Sarcina sp. JB2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 730926..742755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH195_RS03195 (HH195_03195) - 731104..733980 (+) 2877 WP_196371545.1 DUF3427 domain-containing protein -
  HH195_RS03200 (HH195_03200) rcrP 734170..735933 (+) 1764 WP_196371546.1 ABC transporter ATP-binding protein Regulator
  HH195_RS03205 (HH195_03205) rcrQ 735926..737755 (+) 1830 WP_196371547.1 ABC transporter ATP-binding protein Regulator
  HH195_RS03210 (HH195_03210) - 737834..738610 (-) 777 WP_196371548.1 hypothetical protein -
  HH195_RS03215 (HH195_03215) - 738737..740320 (+) 1584 WP_196371549.1 hypothetical protein -
  HH195_RS03220 (HH195_03220) - 740759..741769 (-) 1011 WP_196371550.1 hypothetical protein -
  HH195_RS03225 (HH195_03225) - 742006..742500 (-) 495 WP_196371551.1 aromatic acid exporter family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68268.50 Da        Isoelectric Point: 7.1837

>NTDB_id=440858 HH195_RS03205 WP_196371547.1 735926..737755(+) (rcrQ) [Sarcina sp. JB2]
MSNEIFKGRNHKMVGGPSKRGINNFEKPENFLKSWKKLVLYCKFCIPQIIVAFIFAIIGTIFTIVGPNKLSQITDLITDG
LISGIDLEKVQKIAVFLSILYGLGFVFNYIQGFIMATVTQRLSKSLRTDISEKINRLPLKYFDSMSYGDVLSRVTNDVDT
IGQTMNQSIGVLVSEVTLFLGSLFMMLKTNLIMTFSAVIATIIGFLFMILIISKSQKYFLGQQKYLGKINGHIEEIYSGH
VIVKVYNGEEKAKKTFDKINEKLYESAWKSQFLSGLMMPLMGFIGNFAYVTVCVVGGTMALDNKITFGVIVAFMIYVRLF
TRPLSQIAQAFTNMQSTAAASERVFEFLDETELEDESYKTEILTSSKGDVEFKNVKFGYTPEKIIINDFSVHVLPGQKIA
IVGPTGAGKTTIVNLLMRFYEVNSGEIKIDGISTKKLTRENVHDFFCMVLQDTWLFEGSVKENIVYSKEGISDDEVINAC
KAVGIHHFIESLPMGYDTVLNDKVNLSTGQKQLITIARAMVEKAPLLILDEATSSVDTRTEELIQRAMDKLTVGRTSFVI
AHRLSTIRNADLILVMKDGDIIESGNHEELLSKGGFYSELYNSQFERIS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=440858 HH195_RS03205 WP_196371547.1 735926..737755(+) (rcrQ) [Sarcina sp. JB2]
ATGAGTAATGAGATTTTTAAGGGAAGAAATCACAAAATGGTAGGTGGTCCTTCGAAAAGAGGCATTAATAATTTTGAAAA
ACCAGAAAACTTCTTAAAGAGCTGGAAAAAATTAGTTTTGTATTGTAAATTCTGTATACCTCAAATAATAGTTGCCTTTA
TTTTTGCAATTATAGGTACTATTTTTACTATAGTAGGTCCCAATAAGTTAAGTCAAATAACAGATTTAATAACAGACGGA
TTAATAAGTGGAATTGATTTAGAAAAAGTTCAGAAAATAGCAGTTTTTCTTTCTATACTTTATGGTTTAGGTTTTGTGTT
TAATTATATTCAAGGATTTATAATGGCAACTGTAACACAGAGGCTTTCAAAAAGTTTAAGGACTGATATTTCAGAAAAGA
TAAATAGATTGCCTCTTAAGTACTTTGATTCAATGAGTTACGGAGATGTTTTAAGTAGGGTGACAAATGATGTTGATACT
ATAGGGCAAACCATGAATCAAAGTATTGGTGTATTAGTTAGTGAGGTCACATTATTTTTAGGATCTTTATTTATGATGTT
AAAAACTAATTTAATTATGACTTTTTCTGCTGTTATTGCAACAATAATAGGTTTTTTATTTATGATATTAATTATTTCAA
AATCGCAAAAATATTTTTTGGGACAACAAAAATATTTAGGAAAGATAAATGGACATATAGAGGAAATTTATAGTGGGCAT
GTTATTGTAAAAGTTTATAATGGTGAGGAAAAAGCAAAAAAAACTTTTGATAAAATAAATGAGAAGTTATATGAAAGTGC
TTGGAAATCTCAATTTTTGTCTGGACTTATGATGCCTTTAATGGGGTTTATAGGGAATTTTGCTTATGTAACTGTGTGTG
TTGTAGGTGGAACGATGGCTCTTGATAATAAAATTACCTTTGGTGTTATTGTAGCATTTATGATATATGTAAGATTGTTT
ACAAGGCCATTATCTCAAATAGCACAGGCGTTTACTAATATGCAGTCAACAGCAGCGGCAAGTGAGAGAGTATTTGAATT
TTTAGATGAGACAGAACTTGAAGATGAAAGTTATAAAACTGAGATTTTGACAAGTTCAAAAGGTGATGTAGAGTTTAAAA
ATGTGAAATTTGGATATACTCCTGAAAAAATTATAATAAATGATTTTTCAGTTCATGTATTACCAGGTCAAAAAATAGCA
ATAGTTGGACCAACTGGTGCTGGAAAAACAACTATAGTAAATCTTCTTATGAGGTTTTATGAAGTTAATAGTGGGGAAAT
AAAAATAGATGGAATTAGCACGAAGAAATTAACAAGAGAAAATGTACATGATTTTTTTTGTATGGTTTTACAAGATACTT
GGCTATTTGAGGGCAGTGTAAAAGAGAATATAGTGTATAGCAAAGAGGGGATAAGTGATGATGAAGTAATAAATGCTTGC
AAAGCAGTTGGAATTCACCACTTTATAGAATCACTTCCGATGGGGTATGATACTGTTTTAAATGATAAAGTCAATCTTTC
AACAGGACAAAAACAACTTATAACAATTGCAAGGGCAATGGTAGAAAAAGCACCTCTTCTTATACTAGATGAAGCTACAA
GCTCTGTCGATACTCGTACTGAGGAACTCATTCAAAGAGCTATGGATAAATTAACAGTAGGAAGAACATCTTTTGTTATA
GCACACAGGTTATCTACTATAAGAAATGCGGATTTAATTCTTGTAATGAAAGATGGGGACATTATAGAAAGTGGAAATCA
TGAAGAACTTTTATCTAAAGGTGGTTTTTATTCAGAACTTTATAATAGTCAGTTTGAAAGAATTTCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(49-324)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

59.459

91.133

0.542