Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HH195_RS03200 Genome accession   NZ_CP051754
Coordinates   734170..735933 (+) Length   587 a.a.
NCBI ID   WP_196371546.1    Uniprot ID   -
Organism   Sarcina sp. JB2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 729170..740933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH195_RS03190 (HH195_03190) fliB 729896..731047 (+) 1152 WP_196371544.1 flagellin lysine-N-methylase -
  HH195_RS03195 (HH195_03195) - 731104..733980 (+) 2877 WP_196371545.1 DUF3427 domain-containing protein -
  HH195_RS03200 (HH195_03200) rcrP 734170..735933 (+) 1764 WP_196371546.1 ABC transporter ATP-binding protein Regulator
  HH195_RS03205 (HH195_03205) rcrQ 735926..737755 (+) 1830 WP_196371547.1 ABC transporter ATP-binding protein Regulator
  HH195_RS03210 (HH195_03210) - 737834..738610 (-) 777 WP_196371548.1 hypothetical protein -
  HH195_RS03215 (HH195_03215) - 738737..740320 (+) 1584 WP_196371549.1 hypothetical protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65823.75 Da        Isoelectric Point: 8.9809

>NTDB_id=440857 HH195_RS03200 WP_196371546.1 734170..735933(+) (rcrP) [Sarcina sp. JB2]
MLKIFKYLKSKEWLFVFFSVIFILVQVWLDLKLPDYMSEITTLVQLEGSTMEDILISGGHMMLCAFGSLISCAIVAFFAS
KVAAAFSMRIRSKVFNKVESFSMDEINNFSTASLITRSTNDITQIQMFIAMGLQVIIKAPILAIWAIIKISDKNWQWTTT
TAGAVIFLLVINIIIITFAIPKFKKIQGLTDNLNNITRENLTGLRVIRAYNAESYQEKKFENANNDLTSNNLFANRIMAI
MNPSMGLVMNGLNLAVYWIGAYLIQRASMQDKLSLFSDMVVFSAYAVQVVMAFMMLTIIFIILPRATVCAKRINEVLDTK
LSILDGQKNVSDISLRGEIEFKNVSFKYKDAKEYALKNISFTAHKGEIVAFIGSTGSGKSTLINLIPRLYDATSGEVLVD
GINVKEYRKKDLNNKLGYVPQRAILFSGTVLSNVAYGIDETGDEILEKVKKSISVAQGTDFIENMKNTYNGNIAEGGTNV
SGGQKQRLNIARAIYKNPEIYIFDDSFSALDYKTDRNLRLELKKQTVDATNIIVAQRIGTIKNADKIIVLDEGEIVGMGT
HKELLKTCKVYREIAYSQLSKEELEDE

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=440857 HH195_RS03200 WP_196371546.1 734170..735933(+) (rcrP) [Sarcina sp. JB2]
TTGCTAAAAATATTTAAATATTTAAAATCTAAGGAATGGTTATTTGTATTTTTTAGTGTAATATTTATATTAGTTCAAGT
ATGGCTTGATTTAAAGCTTCCAGACTATATGTCTGAAATTACAACGCTTGTACAACTAGAGGGTAGTACTATGGAAGATA
TTTTGATATCAGGAGGGCACATGATGCTATGTGCGTTTGGAAGTTTAATTTCTTGTGCTATTGTAGCCTTTTTTGCATCA
AAAGTTGCAGCAGCTTTTTCTATGAGGATTCGTAGTAAAGTTTTTAATAAAGTAGAATCTTTTTCTATGGATGAAATTAA
TAATTTTTCCACAGCAAGTTTAATTACTCGTTCAACAAACGACATAACTCAAATTCAAATGTTTATAGCTATGGGACTTC
AAGTGATTATTAAAGCTCCAATTCTGGCAATTTGGGCAATTATAAAAATATCAGATAAAAATTGGCAGTGGACAACAACA
ACAGCTGGAGCAGTTATATTTCTTTTAGTTATAAATATTATTATTATAACTTTTGCAATTCCTAAATTCAAAAAAATTCA
AGGTTTGACAGATAATTTAAATAATATCACACGTGAAAATTTAACAGGACTTAGAGTAATAAGGGCATATAATGCAGAAA
GTTATCAAGAGAAAAAATTTGAAAATGCTAACAATGATTTAACATCTAATAATCTTTTTGCAAATAGGATAATGGCAATT
ATGAATCCTAGCATGGGACTTGTTATGAATGGCTTAAATCTTGCTGTCTATTGGATTGGGGCTTATTTAATACAAAGAGC
AAGTATGCAAGATAAATTGTCTTTATTTAGTGATATGGTAGTTTTTTCAGCTTATGCAGTACAAGTTGTTATGGCATTTA
TGATGTTAACAATTATTTTCATAATACTTCCAAGAGCTACAGTTTGTGCAAAACGAATTAATGAGGTATTAGATACAAAA
CTTAGTATATTAGATGGACAAAAAAATGTTTCAGATATTTCATTAAGAGGTGAAATCGAATTTAAAAATGTTAGCTTTAA
ATATAAAGATGCTAAAGAGTATGCTTTAAAAAACATAAGCTTTACAGCGCACAAAGGTGAAATTGTTGCTTTTATTGGGT
CGACAGGGAGTGGGAAAAGTACTCTTATAAATCTTATCCCAAGACTTTATGATGCAACGAGTGGGGAAGTTTTAGTTGAT
GGAATAAATGTTAAAGAATATAGGAAAAAAGATCTTAATAATAAATTAGGTTATGTGCCACAAAGAGCTATTTTGTTTAG
TGGGACAGTCTTATCTAATGTAGCTTATGGAATAGATGAAACTGGTGATGAAATTTTAGAAAAAGTGAAAAAATCTATAA
GTGTTGCTCAGGGGACAGATTTCATTGAAAATATGAAAAATACTTACAATGGGAATATTGCAGAAGGTGGAACTAATGTA
TCTGGTGGGCAAAAGCAAAGGCTTAATATTGCAAGAGCTATTTATAAAAATCCTGAGATTTATATATTTGATGATTCGTT
TTCAGCTCTTGATTATAAGACAGATAGAAATCTTCGTTTAGAGCTTAAAAAACAAACAGTAGATGCAACTAATATAATTG
TTGCACAAAGAATTGGAACCATTAAAAATGCTGATAAAATAATTGTTTTAGATGAGGGAGAAATAGTTGGAATGGGTACT
CATAAAGAACTTTTAAAGACATGTAAAGTGTATAGAGAAATAGCGTATTCGCAATTGTCTAAGGAGGAGCTTGAGGATGA
GTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.341

100

0.533