Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HHJ43_RS15145 Genome accession   NZ_CP051751
Coordinates   3117452..3118081 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SCU-301     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3112452..3123081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ43_RS15130 (HHJ43_15135) helD 3112694..3114748 (-) 2055 WP_096986471.1 DNA helicase IV -
  HHJ43_RS15135 (HHJ43_15140) yccF 3114871..3115317 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HHJ43_RS15140 (HHJ43_15145) yccS 3115327..3117489 (+) 2163 WP_000875041.1 YccS family putative transporter -
  HHJ43_RS15145 (HHJ43_15150) sxy/tfoX 3117452..3118081 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HHJ43_RS15150 (HHJ43_15155) sulA 3118299..3118808 (+) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  HHJ43_RS15155 (HHJ43_15160) ompA 3119165..3120217 (+) 1053 WP_001563012.1 porin OmpA -
  HHJ43_RS15160 (HHJ43_15165) matP 3120293..3120745 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  HHJ43_RS15165 (HHJ43_15170) ycbZ 3120931..3122691 (+) 1761 WP_096986472.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=440821 HHJ43_RS15145 WP_000839153.1 3117452..3118081(-) (sxy/tfoX) [Escherichia coli strain SCU-301]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=440821 HHJ43_RS15145 WP_000839153.1 3117452..3118081(-) (sxy/tfoX) [Escherichia coli strain SCU-301]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCTGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1