Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HHJ53_RS15105 Genome accession   NZ_CP051744
Coordinates   3148217..3148846 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SCU-484     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3143217..3153846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ53_RS15090 (HHJ53_15095) helD 3143459..3145513 (-) 2055 WP_001350178.1 DNA helicase IV -
  HHJ53_RS15095 (HHJ53_15100) yccF 3145636..3146082 (+) 447 WP_001261236.1 YccF domain-containing protein -
  HHJ53_RS15100 (HHJ53_15105) yccS 3146092..3148254 (+) 2163 WP_000875008.1 YccS family putative transporter -
  HHJ53_RS15105 (HHJ53_15110) sxy/tfoX 3148217..3148846 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HHJ53_RS15110 (HHJ53_15115) sulA 3149065..3149574 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  HHJ53_RS15115 (HHJ53_15120) ompA 3149930..3150970 (+) 1041 WP_001518466.1 porin OmpA -
  HHJ53_RS15120 (HHJ53_15125) matP 3151046..3151498 (-) 453 WP_000877152.1 macrodomain Ter protein MatP -
  HHJ53_RS15125 (HHJ53_15130) ycbZ 3151684..3153444 (+) 1761 WP_000156492.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=440800 HHJ53_RS15105 WP_000839153.1 3148217..3148846(-) (sxy/tfoX) [Escherichia coli strain SCU-484]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=440800 HHJ53_RS15105 WP_000839153.1 3148217..3148846(-) (sxy/tfoX) [Escherichia coli strain SCU-484]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1