Detailed information NTG0440766

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: INT78_RS07235
• Genome accession: NZ_CP063774
• Coordinates: 1506346..1507338 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O25b:H4-ST131
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1501346..1512338

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INT78_RS07215 (INT78_07220)	ygbM	1501984..1502760 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
INT78_RS07220 (INT78_07225)	ygbN	1502849..1504213 (+)	1365	WP_000104433.1	GntP family transporter	-
INT78_RS07225 (INT78_07230)	-	1504356..1505399 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
INT78_RS07230 (INT78_07235)	-	1505624..1506175 (+)	552	WP_001179444.1	flavodoxin family protein	-
INT78_RS07235 (INT78_07240)	rpoS	1506346..1507338 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
INT78_RS07240 (INT78_07245)	nlpD	1507401..1508495 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
INT78_RS07245 (INT78_07250)	pcm	1508680..1509306 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
INT78_RS07250 (INT78_07255)	surE	1509300..1510061 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
INT78_RS07255 (INT78_07260)	truD	1510042..1511091 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
INT78_RS07260 (INT78_07265)	ispF	1511088..1511567 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
INT78_RS07265 (INT78_07270)	ispD	1511567..1512277 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=440766 INT78_RS07235 WP_000081550.1 1506346..1507338(-) (rpoS) [Escherichia coli O25b:H4-ST131]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=440766 INT78_RS07235 WP_000081550.1 1506346..1507338(-) (rpoS) [Escherichia coli O25b:H4-ST131]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715