Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HHJ26_RS22180 Genome accession   NZ_CP051735
Coordinates   4665022..4665651 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain SCU-108     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4660022..4670651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ26_RS22160 (HHJ26_22165) ycbZ 4660422..4662182 (-) 1761 WP_000156501.1 Lon protease family protein -
  HHJ26_RS22165 (HHJ26_22170) matP 4662368..4662820 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  HHJ26_RS22170 (HHJ26_22175) ompA 4662898..4663938 (-) 1041 WP_001350588.1 porin OmpA -
  HHJ26_RS22175 (HHJ26_22180) sulA 4664294..4664803 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  HHJ26_RS22180 (HHJ26_22185) sxy/tfoX 4665022..4665651 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HHJ26_RS22185 (HHJ26_22190) yccS 4665614..4667776 (-) 2163 WP_000875041.1 YccS family putative transporter -
  HHJ26_RS22190 (HHJ26_22195) yccF 4667786..4668232 (-) 447 WP_001261236.1 YccF domain-containing protein -
  HHJ26_RS22195 (HHJ26_22200) helD 4668355..4670409 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=440763 HHJ26_RS22180 WP_000839136.1 4665022..4665651(+) (sxy/tfoX) [Escherichia coli strain SCU-108]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=440763 HHJ26_RS22180 WP_000839136.1 4665022..4665651(+) (sxy/tfoX) [Escherichia coli strain SCU-108]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99