Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   IQE94_RS15170 Genome accession   NZ_CP063659
Coordinates   3219175..3219540 (-) Length   121 a.a.
NCBI ID   WP_190598658.1    Uniprot ID   A0ABR9VMU4
Organism   Synechocystis sp. PCC 7339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3214175..3224540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE94_RS15160 (IQE94_14995) - 3215667..3218528 (-) 2862 WP_212720513.1 methyl-accepting chemotaxis protein -
  IQE94_RS15165 (IQE94_15000) - 3218675..3219142 (-) 468 WP_212720511.1 CheW domain-containing protein -
  IQE94_RS15170 (IQE94_15005) pilH 3219175..3219540 (-) 366 WP_190598658.1 PleD family two-component system response regulator Machinery gene
  IQE94_RS15175 (IQE94_15010) - 3219685..3220899 (-) 1215 WP_223342247.1 response regulator -
  IQE94_RS15180 (IQE94_15015) - 3221519..3223519 (-) 2001 WP_223342248.1 ribonuclease catalytic domain-containing protein -
  IQE94_RS15185 (IQE94_15020) - 3223598..3224182 (-) 585 WP_212720502.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13714.96 Da        Isoelectric Point: 4.4408

>NTDB_id=440650 IQE94_RS15170 WP_190598658.1 3219175..3219540(-) (pilH) [Synechocystis sp. PCC 7339]
MKTVLVVEDTKSDQLLVQGLLKSMGTETVICNNADEALDWLDKNKVPDLIMLDIVMPDVSGYDLCRKIRGELALEDVPIV
FCSTKNEDYDRFWALRQGGNAYLIKPYSPIELMKTVKPYIS

Nucleotide


Download         Length: 366 bp        

>NTDB_id=440650 IQE94_RS15170 WP_190598658.1 3219175..3219540(-) (pilH) [Synechocystis sp. PCC 7339]
GTGAAAACTGTTTTAGTTGTGGAAGATACCAAATCTGACCAATTATTGGTTCAGGGCCTTTTGAAATCCATGGGCACAGA
AACGGTCATTTGCAACAATGCTGATGAGGCTCTGGATTGGCTAGACAAAAACAAGGTGCCGGACTTAATCATGCTGGACA
TCGTGATGCCGGATGTTAGTGGTTATGATCTGTGCCGCAAAATTCGCGGCGAATTAGCCCTGGAGGATGTGCCCATTGTT
TTCTGCTCCACTAAAAATGAGGACTATGACCGGTTTTGGGCCCTGCGGCAGGGGGGCAATGCTTACTTAATCAAGCCCTA
TAGCCCCATCGAGTTAATGAAAACTGTTAAGCCCTATATTTCCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

45.299

96.694

0.438