Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   IQE94_RS06730 Genome accession   NZ_CP063659
Coordinates   1423539..1424495 (+) Length   318 a.a.
NCBI ID   WP_194013520.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7339     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1418539..1429495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE94_RS06715 (IQE94_06640) - 1419521..1420828 (+) 1308 WP_212716985.1 pitrilysin family protein -
  IQE94_RS06720 (IQE94_06645) murD 1421013..1422371 (+) 1359 WP_212716987.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  IQE94_RS06725 (IQE94_06650) - 1422530..1423150 (+) 621 WP_223342958.1 7-carboxy-7-deazaguanine synthase QueE -
  IQE94_RS06730 (IQE94_06655) rpoS 1423539..1424495 (+) 957 WP_194013520.1 RNA polymerase sigma factor, RpoD/SigA family Regulator
  IQE94_RS06735 (IQE94_06660) - 1424655..1425242 (+) 588 WP_212716991.1 DUF1997 domain-containing protein -
  IQE94_RS06740 (IQE94_06665) sfsA 1425296..1426009 (+) 714 WP_212716993.1 DNA/RNA nuclease SfsA -
  IQE94_RS06745 (IQE94_06670) - 1426068..1426682 (+) 615 WP_223342959.1 DUF3782 domain-containing protein -
  IQE94_RS06750 (IQE94_06675) pta 1426852..1428945 (-) 2094 WP_212716997.1 phosphate acetyltransferase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 36343.76 Da        Isoelectric Point: 9.5057

>NTDB_id=440625 IQE94_RS06730 WP_194013520.1 1423539..1424495(+) (rpoS) [Synechocystis sp. PCC 7339]
MTARTSPDSVRAYLREIGRVPLLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAADLSIQELEKTIKEG
ERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRL
PIHITEKLNKIKKAQRQLSQEKGRAASIAELAEHLELTPKQVREYLERSRHPLSLDLRVGDNQDTELGDLLEDDGPLPED
FATYASLQLDLDSLMAELTPQQREVLILRFGLNDGQPLTLASIGSMLSISRERVRQIEREALNKLRKRKSMIQEYLAS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=440625 IQE94_RS06730 WP_194013520.1 1423539..1424495(+) (rpoS) [Synechocystis sp. PCC 7339]
ATGACTGCCAGAACCAGCCCCGATTCCGTCCGTGCCTATCTCAGAGAAATTGGTCGTGTGCCCCTGCTCACCCATGAAGA
AGAGATTGTTTACGCTAAGCAAATTCAACAGGTTGTTAGTCTCAACGAAATCAAGAAGTCTTTAGCCGAAGGCAAGGATG
GCGAGCCAGTTTCCCCCAGCGAGTGGGCCAAGGCTGCCGATTTGTCCATTCAAGAATTAGAGAAAACGATCAAAGAAGGG
GAAAGGGCCAAGCGCAAAATGGTGGAGGCTAATCTCCGACTGGTAGTATCCGTCGCCAAAAAATATCTCAAGCGCAATCT
AGATTTACTCGACCTCATCCAGGAAGGCACCATTGGTATGCAACGGGGGGTGGAAAAATTTGACCCTACCAAAGGCTATC
GATTCTCTACCTATGCCTATTGGTGGATCCGCCAGGCCATTACCCGGGCGATCGCCGAGAAGAGCCGCACTATTCGTCTA
CCGATCCACATTACGGAAAAGTTAAACAAAATTAAAAAAGCCCAACGTCAACTTTCCCAGGAAAAAGGCCGGGCCGCTTC
CATTGCGGAATTGGCGGAACATTTAGAGTTAACGCCCAAACAAGTACGGGAATATTTGGAACGCTCCCGCCATCCCCTTT
CCTTGGATCTAAGGGTAGGGGACAATCAAGATACGGAGTTGGGGGATTTGTTGGAAGATGACGGTCCTTTGCCGGAGGAT
TTTGCCACCTATGCCTCCCTACAGTTGGATCTCGATAGCCTGATGGCGGAATTAACGCCCCAACAACGGGAAGTTTTAAT
TCTTCGCTTTGGTCTTAATGATGGCCAACCCCTCACCCTGGCAAGCATCGGCTCCATGCTAAGCATCAGTCGGGAACGGG
TACGGCAGATTGAACGGGAAGCCTTGAATAAATTGCGCAAACGCAAGTCCATGATCCAAGAATACTTAGCTAGCTAA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(8-37)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70, region 4 (Sigma70_r4)

(254-307)

Sigma-70 region 3 (Sigma70_r3)

(166-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

37.954

95.283

0.362