Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   IQE94_RS01545 Genome accession   NZ_CP063659
Coordinates   336496..336957 (-) Length   153 a.a.
NCBI ID   WP_223342564.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331496..341957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE94_RS01530 (IQE94_01505) - 332340..334787 (+) 2448 WP_223342561.1 tetratricopeptide repeat protein -
  IQE94_RS01535 (IQE94_01510) - 334809..335624 (-) 816 WP_223342562.1 hypothetical protein -
  IQE94_RS01540 (IQE94_01515) - 335659..336237 (-) 579 WP_223342563.1 type IV pilin protein -
  IQE94_RS01545 (IQE94_01520) pilA/pilA1 336496..336957 (-) 462 WP_223342564.1 type IV pilin protein Machinery gene
  IQE94_RS01550 - 337055..338359 (-) 1305 WP_223342565.1 class I SAM-dependent methyltransferase -
  IQE94_RS01555 (IQE94_01530) - 338440..339774 (-) 1335 WP_223342566.1 class I SAM-dependent methyltransferase -
  IQE94_RS01560 (IQE94_01535) - 339996..340991 (+) 996 WP_212715698.1 pentapeptide repeat-containing protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16100.26 Da        Isoelectric Point: 10.2552

>NTDB_id=440609 IQE94_RS01545 WP_223342564.1 336496..336957(-) (pilA/pilA1) [Synechocystis sp. PCC 7339]
MTSNFKFKLLSHLTQKKGEKGFTLIELLVVVIIIGVLAAIALPNLLNQVGKARMSEGKSTLGAINRGQQVYRTENPTFAS
NLTSLDTKVPTTGKFFSYSAASATSTGVVNTASALSAEGDNTTSITTTITYTPTDGTFTLTNSAQTANKSGGW

Nucleotide


Download         Length: 462 bp        

>NTDB_id=440609 IQE94_RS01545 WP_223342564.1 336496..336957(-) (pilA/pilA1) [Synechocystis sp. PCC 7339]
ATGACCAGCAATTTTAAATTTAAACTCCTCTCCCACCTCACTCAGAAAAAAGGAGAAAAAGGTTTTACCCTGATTGAACT
ATTAGTAGTAGTTATTATTATTGGTGTATTGGCTGCTATTGCCTTGCCCAATCTCTTGAACCAAGTAGGTAAAGCCCGGA
TGTCTGAGGGGAAAAGTACCTTAGGTGCCATTAATCGTGGCCAACAGGTGTATCGAACTGAGAATCCAACATTTGCAAGC
AACTTAACCTCTCTAGATACAAAAGTGCCGACAACCGGAAAGTTTTTTAGCTATTCGGCTGCAAGTGCCACCAGTACCGG
CGTTGTAAACACTGCATCAGCTCTTTCTGCTGAGGGTGATAACACAACATCCATTACTACTACCATCACTTATACACCAA
CTGATGGCACTTTCACCTTAACTAACTCTGCTCAAACTGCTAATAAGTCTGGTGGCTGGTAG

Domains

Predicted by InterProScan.

Type IV pilin-like G and H, putative (Pilin_GH)

(55-131)

Prokaryotic N-terminal methylation motif (N_methyl)

(17-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Synechocystis sp. PCC 6803

59.542

85.621

0.51