Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IQS16_RS13445 Genome accession   NZ_CP063518
Coordinates   2794826..2796253 (+) Length   475 a.a.
NCBI ID   WP_203158285.1    Uniprot ID   -
Organism   Escherichia coli strain EH01-18-02     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2789826..2801253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS16_RS13405 (IQS16_13405) yeeW 2790010..2790204 (+) 195 WP_000988599.1 DUF5983 family protein -
  IQS16_RS13410 (IQS16_13410) - 2790250..2790330 (+) 81 Protein_2649 hypothetical protein -
  IQS16_RS13415 (IQS16_13415) - 2790619..2790765 (-) 147 Protein_2650 transposase domain-containing protein -
  IQS16_RS13420 (IQS16_13420) - 2790819..2791001 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  IQS16_RS13425 (IQS16_13425) tmaR 2791102..2791431 (-) 330 WP_000450409.1 DUF496 family protein -
  IQS16_RS13430 (IQS16_13430) yeeA 2791603..2792661 (-) 1059 WP_001200890.1 FUSC family protein -
  IQS16_RS13435 (IQS16_13435) sbmC 2792859..2793332 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  IQS16_RS13440 (IQS16_13440) dacD 2793451..2794617 (-) 1167 WP_000830170.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IQS16_RS13445 (IQS16_13445) sbcB 2794826..2796253 (+) 1428 WP_203158285.1 exodeoxyribonuclease I Machinery gene
  IQS16_RS13450 (IQS16_13450) tsuB 2796296..2796523 (-) 228 WP_000985270.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IQS16_RS13455 (IQS16_13455) tsuA 2796537..2797508 (-) 972 Protein_2658 thiosulfate utilization transporter TsuA/YeeE -
  IQS16_RS24185 - 2797602..2797967 (+) 366 WP_000567766.1 transposase -
  IQS16_RS24190 - 2797991..2798320 (+) 330 WP_285817522.1 IS3 family transposase -
  IQS16_RS24195 - 2798289..2798831 (+) 543 WP_072000679.1 DDE-type integrase/transposase/recombinase -
  IQS16_RS13465 (IQS16_13465) plaP 2799111..2800469 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IQS16_RS13470 (IQS16_13470) yoeI 2800459..2800521 (-) 63 WP_010723108.1 membrane protein YoeI -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54542.89 Da        Isoelectric Point: 5.4700

>NTDB_id=440566 IQS16_RS13445 WP_203158285.1 2794826..2796253(+) (sbcB) [Escherichia coli strain EH01-18-02]
MMNDGKQQSTFLFHDYETFGTHPVLDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHISGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=440566 IQS16_RS13445 WP_203158285.1 2794826..2796253(+) (sbcB) [Escherichia coli strain EH01-18-02]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGTGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACATTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGTTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581