Detailed information NTG0440464

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IQS17_RS08755
• Genome accession: NZ_CP063515
• Coordinates: 1750518..1751510 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EH01-18-04-A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1745518..1756510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IQS17_RS08735 (IQS17_08755)	ygbM	1746156..1746932 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
IQS17_RS08740 (IQS17_08760)	ygbN	1747021..1748385 (+)	1365	WP_000104433.1	GntP family transporter	-
IQS17_RS08745 (IQS17_08765)	-	1748528..1749571 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
IQS17_RS08750 (IQS17_08770)	-	1749796..1750347 (+)	552	WP_001179444.1	flavodoxin family protein	-
IQS17_RS08755 (IQS17_08775)	rpoS	1750518..1751510 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IQS17_RS08760 (IQS17_08780)	nlpD	1751573..1752667 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
IQS17_RS08765 (IQS17_08785)	pcm	1752852..1753478 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IQS17_RS08770 (IQS17_08790)	surE	1753472..1754233 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IQS17_RS08775 (IQS17_08795)	truD	1754214..1755263 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
IQS17_RS08780 (IQS17_08800)	ispF	1755260..1755739 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IQS17_RS08785 (IQS17_08805)	ispD	1755739..1756449 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=440464 IQS17_RS08755 WP_000081550.1 1750518..1751510(-) (rpoS) [Escherichia coli strain EH01-18-04-A]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=440464 IQS17_RS08755 WP_000081550.1 1750518..1751510(-) (rpoS) [Escherichia coli strain EH01-18-04-A]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715