Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HH213_RS16275 Genome accession   NZ_CP051684
Coordinates   3563431..3564474 (-) Length   347 a.a.
NCBI ID   WP_110847285.1    Uniprot ID   -
Organism   Duganella dendranthematis strain AF9R3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3558431..3569474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH213_RS16255 (HH213_16255) - 3560064..3560552 (-) 489 WP_169112897.1 hypothetical protein -
  HH213_RS16260 (HH213_16260) rpoH 3560707..3561594 (-) 888 WP_371867993.1 RNA polymerase sigma factor RpoH -
  HH213_RS16265 (HH213_16265) ftsX 3561838..3562758 (-) 921 WP_110847287.1 permease-like cell division protein FtsX -
  HH213_RS16270 (HH213_16270) ftsE 3562755..3563411 (-) 657 WP_110847286.1 cell division ATP-binding protein FtsE -
  HH213_RS16275 (HH213_16275) pilA 3563431..3564474 (-) 1044 WP_110847285.1 signal recognition particle-docking protein FtsY Machinery gene
  HH213_RS16280 (HH213_16280) - 3564604..3565551 (-) 948 WP_169112898.1 MerR family transcriptional regulator -
  HH213_RS16285 (HH213_16285) - 3566331..3567422 (+) 1092 WP_110847283.1 porin -
  HH213_RS16290 (HH213_16290) - 3567496..3568029 (+) 534 WP_110847282.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36859.95 Da        Isoelectric Point: 6.6614

>NTDB_id=440441 HH213_RS16275 WP_110847285.1 3563431..3564474(-) (pilA) [Duganella dendranthematis strain AF9R3]
MFSFFKKKPVAPEAPVAPVAAPAVVSATTPAAVTPDVPDLLPIEEPAERKQSWMARLKAGLSKTSNNLSVLFIGAKIDDD
LYDELEAALLMSDAGVDATEYLLTELKRKVKEDKLLDAAAVKAALKQLLIELLTPLERPFVLGRHTPTVMMISGVNGAGK
TTTIGKLAKHMQTHGQSVLLAAGDTFRAAAREQLMVWGQRNNITVISQASGDPAAVSFDAVQSGKAKGMDVVMIDTAGRL
PTQLHLMEELKKVQRVLGKGMDGAPHETLLVIDGNTGQNALAQVKAFDDALKLTGLVITKLDGTAKGGVLAAIARVRPVP
VYFIGVGEKIEDLQPFVAAEFVEALLG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=440441 HH213_RS16275 WP_110847285.1 3563431..3564474(-) (pilA) [Duganella dendranthematis strain AF9R3]
ATGTTCAGCTTCTTCAAGAAAAAACCTGTCGCTCCCGAAGCGCCTGTGGCGCCTGTCGCCGCCCCGGCCGTGGTTTCCGC
GACCACTCCCGCCGCCGTTACGCCCGACGTTCCCGACCTGCTGCCGATCGAAGAGCCGGCGGAACGTAAACAATCGTGGA
TGGCGCGCCTGAAAGCCGGCCTGTCCAAAACCTCCAACAACCTGTCGGTGCTGTTCATCGGCGCCAAGATCGACGACGAC
CTGTACGACGAGCTGGAAGCGGCGCTGCTGATGTCCGACGCCGGCGTCGACGCCACCGAATACCTGCTCACCGAACTCAA
ACGCAAAGTCAAGGAAGACAAGCTGCTGGACGCCGCCGCCGTCAAGGCCGCGCTGAAACAGCTGCTGATCGAATTGCTGA
CGCCGCTGGAGCGCCCGTTCGTGCTGGGCCGCCACACGCCGACCGTGATGATGATCTCCGGCGTCAACGGCGCCGGCAAG
ACCACCACCATCGGCAAGCTGGCCAAGCACATGCAGACGCACGGCCAGTCGGTGCTGCTGGCCGCCGGCGACACCTTCCG
CGCCGCCGCCCGCGAGCAACTGATGGTCTGGGGCCAGCGCAACAACATCACCGTGATCTCGCAAGCCTCGGGCGATCCGG
CCGCCGTGTCGTTCGACGCCGTGCAGTCCGGCAAAGCCAAGGGCATGGACGTGGTCATGATCGACACCGCCGGCCGCCTG
CCGACCCAGCTGCACCTGATGGAAGAGCTGAAAAAAGTCCAGCGCGTGCTCGGCAAGGGTATGGACGGCGCACCGCACGA
AACTCTGCTGGTGATCGACGGCAATACCGGGCAAAATGCGCTGGCGCAGGTGAAGGCCTTCGACGACGCCCTCAAGCTGA
CCGGCCTGGTGATCACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTGGCCGCGATTGCGCGCGTGCGTCCGGTGCCG
GTGTACTTCATCGGCGTGGGCGAGAAGATTGAAGACTTGCAGCCGTTTGTGGCTGCCGAATTTGTAGAAGCACTGCTTGG
CTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(147-347)

SRP54-type protein, helical bundle domain (SRP54_N)

(74-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

61.184

87.608

0.536