Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HH213_RS13615 Genome accession   NZ_CP051684
Coordinates   2979087..2980559 (+) Length   490 a.a.
NCBI ID   WP_110846455.1    Uniprot ID   -
Organism   Duganella dendranthematis strain AF9R3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2974087..2985559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH213_RS13590 (HH213_13590) - 2975582..2976571 (+) 990 WP_110846451.1 SIS domain-containing protein -
  HH213_RS13595 (HH213_13595) - 2976571..2977098 (+) 528 WP_174864412.1 HAD family hydrolase -
  HH213_RS13600 (HH213_13600) lptC 2977111..2977704 (+) 594 WP_110846453.1 LPS export ABC transporter periplasmic protein LptC -
  HH213_RS13605 (HH213_13605) lptA 2977719..2978321 (+) 603 WP_308494539.1 lipopolysaccharide transport periplasmic protein LptA -
  HH213_RS13610 (HH213_13610) lptB 2978323..2979075 (+) 753 WP_110846454.1 LPS export ABC transporter ATP-binding protein -
  HH213_RS13615 (HH213_13615) rpoN/rpoN1 2979087..2980559 (+) 1473 WP_110846455.1 RNA polymerase factor sigma-54 Machinery gene
  HH213_RS13620 (HH213_13620) hpf 2980637..2980999 (+) 363 WP_110846456.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  HH213_RS13625 (HH213_13625) - 2981058..2981975 (+) 918 WP_169112561.1 alginate lyase family protein -
  HH213_RS13630 (HH213_13630) - 2981986..2983050 (+) 1065 WP_169112562.1 enoyl-CoA hydratase/isomerase family protein -
  HH213_RS30675 (HH213_13635) - 2983023..2983340 (-) 318 WP_371875701.1 addiction module antidote protein -
  HH213_RS13640 (HH213_13640) - 2983322..2983624 (-) 303 WP_169112564.1 type II toxin-antitoxin system RelE/ParE family toxin -
  HH213_RS13645 (HH213_13645) rapZ 2983672..2984532 (-) 861 WP_110846459.1 RNase adapter RapZ -

Sequence

Protein


Download         Length: 490 a.a.        Molecular weight: 54476.09 Da        Isoelectric Point: 5.0360

>NTDB_id=440436 HH213_RS13615 WP_110846455.1 2979087..2980559(+) (rpoN/rpoN1) [Duganella dendranthematis strain AF9R3]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDHSLRLLGDGAINQQAPAGDAPAEGP
PGEAPAAEADNYEAPGADTESTTPDADIDWGDAGRSKNSDDEDARPQLEAHHCTLRDHLMEQMRVTVLEMRDRALVELII
DALDENGYLEEALEEIHARLPEELEVEIEELQTALKLLQSFDPMGVGARNAAECLAIQIKRLPGVPLVTRRMALAIVENH
LTWFAQRDFNKLKKALLCDDEDLREAQTVIRQCNPHPGAAFASDVSDYVVPDVIVKKSRNGWQVSLNNDVMPRLRVNAMY
ANLLKQGKGEGAMGAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRVTT
QKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREALK
IPPVSLRKSL

Nucleotide


Download         Length: 1473 bp        

>NTDB_id=440436 HH213_RS13615 WP_110846455.1 2979087..2980559(+) (rpoN/rpoN1) [Duganella dendranthematis strain AF9R3]
ATGAAACAGTCTTTGCAACTGCGCACGTCGCAGCATCTCGCGTTGACGCCACAGTTGCAGCAGTCGATCCGGCTGCTGCA
ATTGTCGACGCTGGAGCTGCACCAGGAACTAGAACAGCTGCTGACCGATAACCCGCTGCTGGAGCGTCTTGACGACCCGC
TGGATCACTCGCTGCGCCTGCTGGGCGATGGCGCCATCAACCAACAGGCGCCGGCCGGTGACGCGCCCGCCGAAGGCCCG
CCAGGCGAGGCGCCGGCGGCCGAAGCCGACAATTACGAGGCGCCCGGCGCCGACACCGAAAGCACCACGCCCGACGCCGA
CATCGACTGGGGAGACGCCGGCCGCAGCAAGAACAGCGACGACGAGGATGCGCGGCCGCAGCTGGAAGCGCATCACTGCA
CGCTGCGCGACCATCTGATGGAACAGATGCGCGTGACGGTGCTGGAAATGCGCGACCGCGCGCTGGTCGAACTGATCATC
GACGCGCTCGACGAAAACGGCTACCTGGAAGAAGCGCTGGAAGAGATCCACGCGCGCCTGCCGGAAGAACTGGAAGTCGA
GATCGAGGAATTGCAGACCGCGCTGAAGCTGCTGCAAAGCTTCGATCCGATGGGGGTCGGCGCGCGCAATGCGGCCGAGT
GCCTGGCGATCCAAATCAAGCGCTTGCCCGGCGTGCCGTTGGTGACCCGGCGCATGGCGCTGGCCATCGTGGAAAACCAT
CTGACCTGGTTTGCGCAGCGCGATTTCAACAAGCTGAAAAAAGCGCTGCTGTGCGATGACGAAGATCTGCGCGAAGCACA
GACCGTGATCCGCCAGTGCAATCCGCACCCGGGCGCGGCGTTCGCATCGGACGTGTCTGACTACGTGGTGCCGGACGTGA
TCGTCAAGAAGTCGCGCAACGGCTGGCAGGTCAGCCTGAACAACGACGTCATGCCGCGCCTGCGCGTCAACGCCATGTAC
GCCAACCTGCTCAAGCAGGGCAAGGGTGAAGGCGCGATGGGCGCGCAGCTGCAGGAGGCCAAGTGGCTGATCAAGAATAT
GCGGCAGCGTTTCGACACGATCCTGCGCGTGGCACAGGCGATAGTAGAAAGACAAAAGAACTTTTTCTCGCACGGCGCGG
TCGCCATGCGCCCCCTTGTGCTTCGCGAAATTGCTGATACACTGGGTTTACACGAGAGCACAATTTCTCGCGTAACAACT
CAAAAATATATGCTGACCCCGCACGGCATGTTTGAGTTGAAATATTTCTTTGGTAGCCATGTCGCCACCGAAGCTGGCGG
GGAAGCAAGTTCGACGGCGATACGCGCTTTGATCGTGCAATTGACAGGAGCTGAAGACCCGAAAAATCCTTTATCCGACA
GTAAGATTGCGGACATGCTGGGAGAACAGGGCATGGTGATTGCGCGACGCACTGTTGCCAAATATCGCGAAGCTCTCAAG
ATCCCGCCAGTCAGTCTCCGCAAGTCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(335-488)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-320)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

62.103

100

0.639