Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HH213_RS06615 Genome accession   NZ_CP051684
Coordinates   1424923..1425318 (-) Length   131 a.a.
NCBI ID   WP_110845163.1    Uniprot ID   -
Organism   Duganella dendranthematis strain AF9R3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1419923..1430318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH213_RS06600 (HH213_06600) - 1421675..1423993 (-) 2319 WP_169111588.1 methyl-accepting chemotaxis protein -
  HH213_RS06605 (HH213_06605) - 1424021..1424536 (-) 516 WP_110845161.1 chemotaxis protein CheW -
  HH213_RS06610 (HH213_06610) - 1424538..1424903 (-) 366 WP_110845162.1 PleD family two-component system response regulator -
  HH213_RS06615 (HH213_06615) pilG 1424923..1425318 (-) 396 WP_110845163.1 PleD family two-component system response regulator Regulator
  HH213_RS06620 (HH213_06620) - 1425374..1425526 (-) 153 WP_110845658.1 rubredoxin -
  HH213_RS06625 (HH213_06625) - 1425618..1426556 (+) 939 WP_169111590.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HH213_RS06630 (HH213_06630) hemL 1426574..1427860 (+) 1287 WP_169111592.1 glutamate-1-semialdehyde 2,1-aminomutase -
  HH213_RS06635 (HH213_06635) - 1427915..1428889 (+) 975 WP_169111594.1 DUF4351 domain-containing protein -
  HH213_RS06640 (HH213_06640) - 1428853..1430178 (-) 1326 WP_169111604.1 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14169.44 Da        Isoelectric Point: 7.3214

>NTDB_id=440428 HH213_RS06615 WP_110845163.1 1424923..1425318(-) (pilG) [Duganella dendranthematis strain AF9R3]
MTSTPLKIMVIDDSSTIRRSAEIFLSQAGYQVVLAEDGFDALAKINDHHPALVFCDILMPRLDGYQTCALIKKSAKFHAT
PVLMLSSKDGLFDRARGAMVGAVAYLTKPFTKDSLLTAVREHTGGAVATPE

Nucleotide


Download         Length: 396 bp        

>NTDB_id=440428 HH213_RS06615 WP_110845163.1 1424923..1425318(-) (pilG) [Duganella dendranthematis strain AF9R3]
ATGACCTCTACGCCCCTGAAAATCATGGTGATCGACGATAGCAGCACGATTCGTCGCTCCGCCGAGATCTTCCTGAGCCA
GGCCGGCTACCAGGTGGTGCTGGCCGAAGACGGCTTCGACGCGCTGGCCAAGATCAACGACCATCACCCGGCGCTGGTGT
TCTGCGACATCCTGATGCCACGGCTGGACGGCTACCAGACCTGCGCGCTGATTAAAAAAAGTGCGAAATTCCATGCCACG
CCGGTGCTGATGCTGTCCTCCAAGGACGGCCTGTTCGACCGCGCGCGCGGCGCCATGGTCGGCGCGGTGGCCTATCTGAC
CAAACCTTTTACCAAGGACAGCCTGCTGACCGCCGTGCGCGAGCACACCGGCGGCGCTGTCGCTACACCAGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

63.248

89.313

0.565