Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IQS18_RS14230 Genome accession   NZ_CP063511
Coordinates   2952723..2954150 (-) Length   475 a.a.
NCBI ID   WP_000980592.1    Uniprot ID   -
Organism   Escherichia coli strain EH08-18-36     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2947723..2959150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS18_RS14200 (IQS18_14205) yeeZ 2947778..2948602 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  IQS18_RS14205 (IQS18_14210) yeeY 2948648..2949577 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  IQS18_RS14210 (IQS18_14215) yoeI 2949792..2949854 (+) 63 WP_010723108.1 membrane protein YoeI -
  IQS18_RS14215 (IQS18_14220) plaP 2949844..2951202 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IQS18_RS14220 (IQS18_14225) tsuA 2951381..2952439 (+) 1059 WP_203024133.1 thiosulfate utilization transporter TsuA/YeeE -
  IQS18_RS14225 (IQS18_14230) tsuB 2952453..2952680 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IQS18_RS14230 (IQS18_14235) sbcB 2952723..2954150 (-) 1428 WP_000980592.1 exodeoxyribonuclease I Machinery gene
  IQS18_RS14235 (IQS18_14240) dacD 2954359..2955525 (+) 1167 WP_063116138.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IQS18_RS14240 (IQS18_14245) sbmC 2955644..2956117 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  IQS18_RS14245 (IQS18_14250) yeeA 2956315..2957373 (+) 1059 WP_001200905.1 FUSC family protein -
  IQS18_RS14250 (IQS18_14255) tmaR 2957545..2957874 (+) 330 WP_000450409.1 DUF496 family protein -
  IQS18_RS14255 (IQS18_14260) - 2957975..2958157 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  IQS18_RS14260 (IQS18_14265) - 2958211..2958357 (+) 147 Protein_2799 transposase domain-containing protein -
  IQS18_RS14265 (IQS18_14270) - 2958646..2958726 (-) 81 Protein_2800 hypothetical protein -
  IQS18_RS14270 (IQS18_14275) yeeW 2958772..2958966 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54452.77 Da        Isoelectric Point: 5.4720

>NTDB_id=440414 IQS18_RS14230 WP_000980592.1 2952723..2954150(-) (sbcB) [Escherichia coli strain EH08-18-36]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=440414 IQS18_RS14230 WP_000980592.1 2952723..2954150(-) (sbcB) [Escherichia coli strain EH08-18-36]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583