Detailed information NTG0440400

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IQS18_RS10440
• Genome accession: NZ_CP063511
• Coordinates: 2165073..2166065 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EH08-18-36
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2160073..2171065

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IQS18_RS10410 (IQS18_10415)	ispD	2160134..2160844 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IQS18_RS10415 (IQS18_10420)	ispF	2160844..2161323 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IQS18_RS10420 (IQS18_10425)	truD	2161320..2162369 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IQS18_RS10425 (IQS18_10430)	surE	2162350..2163111 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IQS18_RS10430 (IQS18_10435)	pcm	2163105..2163731 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IQS18_RS10435 (IQS18_10440)	nlpD	2163916..2165010 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IQS18_RS10440 (IQS18_10445)	rpoS	2165073..2166065 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IQS18_RS10445 (IQS18_10450)	ygbN	2166159..2167523 (-)	1365	WP_021547117.1	GntP family transporter	-
IQS18_RS10450 (IQS18_10455)	ygbM	2167612..2168388 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
IQS18_RS10455 (IQS18_10460)	ygbL	2168393..2169031 (-)	639	WP_001278994.1	aldolase	-
IQS18_RS10460 (IQS18_10465)	otnK	2169028..2170290 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=440400 IQS18_RS10440 WP_000081550.1 2165073..2166065(+) (rpoS) [Escherichia coli strain EH08-18-36]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=440400 IQS18_RS10440 WP_000081550.1 2165073..2166065(+) (rpoS) [Escherichia coli strain EH08-18-36]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715