Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HH215_RS08075 Genome accession   NZ_CP051680
Coordinates   1833484..1834434 (-) Length   316 a.a.
NCBI ID   WP_169279431.1    Uniprot ID   A0A7Z2ZKU1
Organism   Cohnella herbarum strain MFER-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1828484..1839434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH215_RS08050 (HH215_08050) - 1829888..1830208 (-) 321 WP_174887608.1 hypothetical protein -
  HH215_RS08055 (HH215_08055) - 1830358..1830693 (-) 336 WP_169279427.1 antibiotic biosynthesis monooxygenase -
  HH215_RS08060 (HH215_08060) - 1830719..1831726 (-) 1008 WP_169279428.1 siderophore ABC transporter substrate-binding protein -
  HH215_RS08065 (HH215_08065) - 1831789..1832547 (-) 759 WP_169279429.1 ABC transporter ATP-binding protein -
  HH215_RS08070 (HH215_08070) - 1832544..1833491 (-) 948 WP_169279430.1 iron chelate uptake ABC transporter family permease subunit -
  HH215_RS08075 (HH215_08075) ceuB 1833484..1834434 (-) 951 WP_169279431.1 ABC transporter permease Machinery gene
  HH215_RS08080 (HH215_08080) - 1834543..1836099 (-) 1557 WP_169279432.1 AraC family transcriptional regulator -
  HH215_RS08085 (HH215_08085) copZ 1836330..1836530 (-) 201 WP_169279433.1 copper chaperone CopZ -
  HH215_RS08090 (HH215_08090) - 1836550..1836882 (-) 333 WP_169279434.1 metal-sensitive transcriptional regulator -
  HH215_RS08095 (HH215_08095) - 1836974..1838161 (-) 1188 WP_254450411.1 MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34454.81 Da        Isoelectric Point: 10.0402

>NTDB_id=440396 HH215_RS08075 WP_169279431.1 1833484..1834434(-) (ceuB) [Cohnella herbarum strain MFER-1]
MKIGILWIVLVVLAFTSLFVGVTDINPLDLFSMTEYQWEIMQVSRIPRLISIIIAGIGMSVIGMIMQQLARNKFVSPTTA
GTTDSASLGVLVAMLLFPGASPLLKIVIAFVFAFVGTMIFMRILTKVQFRDPILIALIGLMFGGIVGSITTFLALKYNML
QSVMSWLQGDFSVILKGRYEMLYVSLPLIAIAYLFANRFTIAGMGEDFAANLGLKYRQVVNIGLVIVALVSAVILLTVGS
LPFLGLIIPNIVSIYKGDNLRSNLSHTALLGAIFVLSCDILGRIIIYPYEVSIGLMVGVLGSGIFLYLILRRKSLA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=440396 HH215_RS08075 WP_169279431.1 1833484..1834434(-) (ceuB) [Cohnella herbarum strain MFER-1]
ATGAAAATCGGAATCTTATGGATTGTGCTCGTCGTGCTAGCCTTCACGTCCTTATTCGTCGGAGTAACCGATATAAACCC
GTTGGATTTGTTCTCGATGACGGAATATCAATGGGAGATTATGCAGGTAAGCCGAATTCCGCGCTTGATCAGCATTATTA
TCGCGGGAATAGGGATGAGCGTTATCGGGATGATTATGCAGCAGTTGGCTAGAAACAAGTTCGTGTCGCCTACGACGGCG
GGAACGACGGATTCGGCAAGCCTGGGCGTGCTCGTCGCCATGTTGCTTTTTCCGGGTGCATCGCCCTTACTGAAAATCGT
CATCGCATTCGTGTTCGCTTTTGTCGGAACGATGATTTTCATGCGAATCTTGACCAAGGTTCAGTTCCGGGATCCGATCT
TGATCGCTCTTATTGGTTTGATGTTCGGAGGGATCGTGGGATCGATCACGACTTTCTTGGCGCTCAAATACAACATGCTG
CAAAGCGTGATGAGCTGGCTCCAAGGCGACTTCTCGGTCATCCTTAAGGGAAGATACGAGATGCTGTATGTCAGCTTACC
GTTAATCGCGATCGCCTACTTATTCGCCAACCGATTTACGATCGCCGGCATGGGCGAAGATTTCGCGGCAAACCTCGGGC
TTAAATATCGCCAAGTCGTCAATATCGGACTAGTAATCGTAGCGCTCGTCTCGGCCGTCATTCTCCTTACGGTCGGTTCG
CTGCCATTCCTGGGGCTGATTATCCCGAATATCGTCTCGATCTATAAAGGAGACAACTTAAGAAGCAACCTATCCCATAC
CGCCTTACTGGGCGCGATATTCGTTCTGTCTTGCGACATCCTTGGACGTATCATTATCTATCCATACGAAGTATCCATCG
GATTAATGGTTGGCGTACTCGGCAGCGGTATTTTCCTCTATCTGATCTTGAGGAGGAAGAGCCTTGCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2ZKU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.418

100

0.484