Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HH196_RS10020 Genome accession   NZ_CP051666
Coordinates   2063093..2064469 (+) Length   458 a.a.
NCBI ID   WP_169451980.1    Uniprot ID   A0A858QZY8
Organism   Marinobacterium sp. LSUCC0821     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2058093..2069469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH196_RS09995 (HH196_09995) - 2058678..2059655 (+) 978 WP_169451975.1 ABC transporter permease -
  HH196_RS10000 (HH196_10000) - 2059658..2060278 (+) 621 WP_169451976.1 hypothetical protein -
  HH196_RS10005 (HH196_10005) - 2060307..2060801 (+) 495 WP_169451977.1 cytochrome b -
  HH196_RS10010 (HH196_10010) - 2060798..2061643 (+) 846 WP_169451978.1 phosphatase PAP2 family protein -
  HH196_RS10015 (HH196_10015) - 2061718..2062989 (-) 1272 WP_169451979.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein -
  HH196_RS10020 (HH196_10020) radA 2063093..2064469 (+) 1377 WP_169451980.1 DNA repair protein RadA Machinery gene
  HH196_RS10025 (HH196_10025) - 2064500..2065000 (+) 501 WP_248276851.1 peptidylprolyl isomerase -
  HH196_RS10030 (HH196_10030) - 2065010..2065348 (+) 339 WP_169451981.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  HH196_RS10035 (HH196_10035) ettA 2065401..2067059 (-) 1659 WP_169451982.1 energy-dependent translational throttle protein EttA -
  HH196_RS10040 (HH196_10040) glyA 2067291..2068547 (+) 1257 WP_169451983.1 serine hydroxymethyltransferase -
  HH196_RS10045 (HH196_10045) nrdR 2068688..2069242 (+) 555 WP_169451984.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48913.31 Da        Isoelectric Point: 7.7504

>NTDB_id=440367 HH196_RS10020 WP_169451980.1 2063093..2064469(+) (radA) [Marinobacterium sp. LSUCC0821]
MAKAKQAYVCNDCGADYTKWQGQCSACKAWNTITEIRLGAAPAGGAQAALRRQGYSGSAGQSKVVSLSEVELEAMPRIDT
GIGELDRVLGGGLVPGSAILIGGHPGAGKSTLLLQTMAQLVATMPALYVTGEESLQQVAMRAKRLGLNVGDLKMLSETSV
ETICDVADTLKPKVLVIDSIQVMHVADVQSAPGSVSQVRESAAYLTRYAKQTGTVIFLVGHVTKDGSLAGPKVLEHMIDC
SLQLEGDSDSRFRTLRSHKNRFGAVNELGVFAMLETGLKEVKNPSSIFLNRDDHARPGSIVVVVWEGTRPMLVELQALVD
TSHHSNPRRVAVGMDHNRLAMLLAVLNRHGGLMTGDQDVFINVVGGIRVVETSADLALLLSVVSSFRDKALPNDLIVFGE
VGLSGEIRPVPNGQERIREAAKHGFTRAIVPKGNKPKDSVQGMKIITVDRLSEALDAI

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=440367 HH196_RS10020 WP_169451980.1 2063093..2064469(+) (radA) [Marinobacterium sp. LSUCC0821]
ATGGCAAAGGCTAAACAAGCCTACGTTTGTAATGATTGCGGTGCCGATTACACCAAGTGGCAAGGGCAGTGTAGTGCCTG
TAAAGCGTGGAACACGATTACGGAAATTCGCTTAGGCGCAGCGCCTGCTGGTGGTGCCCAAGCGGCTCTTCGTAGGCAGG
GTTATTCAGGCTCCGCTGGCCAATCTAAAGTGGTCAGCCTATCGGAAGTCGAACTCGAAGCGATGCCGCGTATCGATACC
GGTATCGGTGAACTTGATCGTGTTTTGGGCGGAGGCTTAGTGCCGGGCTCTGCGATCTTAATCGGTGGTCATCCGGGTGC
TGGTAAAAGTACGCTGCTTCTGCAAACGATGGCGCAGTTAGTCGCTACCATGCCGGCTCTTTATGTCACCGGCGAGGAGT
CTCTACAGCAGGTTGCCATGCGTGCTAAACGTTTGGGACTGAATGTCGGTGACCTGAAAATGCTTTCAGAGACCTCTGTT
GAGACTATCTGTGACGTGGCAGATACCTTAAAGCCCAAAGTGTTGGTGATTGATTCTATTCAGGTAATGCACGTAGCTGA
TGTTCAATCTGCACCGGGTTCTGTTTCACAGGTTCGTGAAAGTGCAGCCTATCTGACCCGCTATGCAAAGCAGACGGGCA
CCGTAATCTTTTTGGTTGGCCATGTGACCAAAGATGGTTCACTTGCTGGTCCGAAAGTACTGGAGCATATGATCGACTGC
TCACTGCAGTTAGAGGGCGATTCTGATAGCCGTTTCCGTACGCTTCGCAGTCATAAAAACCGCTTTGGCGCAGTTAATGA
GCTCGGTGTCTTCGCGATGCTTGAGACCGGCCTCAAAGAGGTGAAAAACCCAAGTTCAATCTTCCTAAATAGGGATGATC
ACGCACGACCTGGCAGTATTGTTGTGGTCGTATGGGAAGGGACACGGCCGATGCTTGTTGAGTTGCAGGCATTGGTGGAT
ACTTCGCACCACTCTAATCCGCGCCGCGTTGCTGTGGGTATGGACCATAACCGTCTTGCGATGTTACTGGCCGTTCTGAA
CCGTCATGGTGGGTTGATGACCGGTGATCAAGATGTCTTTATCAACGTTGTCGGTGGTATTCGAGTGGTAGAGACCAGTG
CCGATTTGGCGCTACTGCTATCTGTTGTATCAAGCTTCCGTGACAAAGCGTTGCCGAACGATTTGATCGTCTTTGGTGAG
GTGGGCTTGTCTGGTGAAATACGCCCAGTGCCAAATGGCCAGGAGCGTATTCGTGAAGCAGCTAAACACGGTTTTACTCG
CGCTATCGTGCCCAAAGGTAATAAGCCAAAGGATAGCGTGCAGGGGATGAAAATAATCACAGTCGATCGCTTATCCGAGG
CGTTGGACGCAATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(351-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A858QZY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.948

100

0.485
  radA Streptococcus pneumoniae Rx1

41.469

100

0.419
  radA Streptococcus pneumoniae D39

41.469

100

0.419
  radA Streptococcus pneumoniae R6

41.469

100

0.419
  radA Streptococcus pneumoniae TIGR4

41.469

100

0.419
  radA Streptococcus mitis NCTC 12261

41.758

99.345

0.415
  radA Streptococcus mitis SK321

41.758

99.345

0.415