Detailed information NTG0440267

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IQS20_RS21730
• Genome accession: NZ_CP063499
• Coordinates: 4522512..4523504 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EH10-18-47
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4517512..4528504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IQS20_RS21700 (IQS20_21710)	ispD	4517573..4518283 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IQS20_RS21705 (IQS20_21715)	ispF	4518283..4518762 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IQS20_RS21710 (IQS20_21720)	truD	4518759..4519808 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IQS20_RS21715 (IQS20_21725)	surE	4519789..4520550 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IQS20_RS21720 (IQS20_21730)	pcm	4520544..4521170 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IQS20_RS21725 (IQS20_21735)	nlpD	4521355..4522449 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IQS20_RS21730 (IQS20_21740)	rpoS	4522512..4523504 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IQS20_RS21735 (IQS20_21745)	ygbN	4523598..4524962 (-)	1365	WP_203161133.1	GntP family transporter	-
IQS20_RS21740 (IQS20_21750)	ygbM	4525051..4525827 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
IQS20_RS21745 (IQS20_21755)	ygbL	4525832..4526470 (-)	639	WP_001278994.1	aldolase	-
IQS20_RS21750 (IQS20_21760)	otnK	4526467..4527729 (-)	1263	WP_000590404.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=440267 IQS20_RS21730 WP_000081550.1 4522512..4523504(+) (rpoS) [Escherichia coli strain EH10-18-47]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=440267 IQS20_RS21730 WP_000081550.1 4522512..4523504(+) (rpoS) [Escherichia coli strain EH10-18-47]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715