Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HG421_RS12970 Genome accession   NZ_CP051651
Coordinates   3068912..3069313 (-) Length   133 a.a.
NCBI ID   WP_005913706.1    Uniprot ID   A0AAI7ZH35
Organism   Xanthomonas campestris pv. badrii strain NEB122     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3063912..3074313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG421_RS12955 (HG421_12955) - 3065926..3067962 (-) 2037 WP_169706725.1 methyl-accepting chemotaxis protein -
  HG421_RS12960 (HG421_12960) - 3068002..3068532 (-) 531 WP_014508568.1 chemotaxis protein CheW -
  HG421_RS12965 (HG421_12965) - 3068532..3068894 (-) 363 WP_029220782.1 response regulator -
  HG421_RS12970 (HG421_12970) pilG 3068912..3069313 (-) 402 WP_005913706.1 twitching motility response regulator PilG Regulator
  HG421_RS12975 (HG421_12975) gshB 3069550..3070500 (+) 951 WP_169706726.1 glutathione synthase -
  HG421_RS12980 (HG421_12980) - 3070497..3071372 (+) 876 WP_169706727.1 energy transducer TonB -
  HG421_RS12985 (HG421_12985) - 3071417..3072334 (-) 918 WP_169706728.1 ADP-ribosylglycohydrolase family protein -
  HG421_RS12990 (HG421_12990) tsaB 3072331..3073050 (-) 720 WP_169706729.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14667.03 Da        Isoelectric Point: 6.9539

>NTDB_id=440246 HG421_RS12970 WP_005913706.1 3068912..3069313(-) (pilG) [Xanthomonas campestris pv. badrii strain NEB122]
MSENIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=440246 HG421_RS12970 WP_005913706.1 3068912..3069313(-) (pilG) [Xanthomonas campestris pv. badrii strain NEB122]
ATGAGTGAAAACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTGATCGATGATTCGAAAACCATTCGCCG
CACCGCCGAAACGCTGTTGAAGCGCGAAGGGTGTGAAGTAGTGACAGCGACGGATGGTTTCGAGGCACTGGCCAAGATTG
CGGACCAGCAACCTCAGATCATCTTTGTGGACATCATGATGCCGCGTCTGGATGGGTACCAGACCTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAGTCGACGCCGGTGATCATGTTGTCGTCCAAGGATGGCCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGCTCCGAGCAATATCTGACCAAGCCATTCACACGTGAAGAATTACTGAGCGCGATCCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684