Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HG715_RS03335 Genome accession   NZ_CP051649
Coordinates   660282..662078 (-) Length   598 a.a.
NCBI ID   WP_170073598.1    Uniprot ID   -
Organism   Lactobacillus acetotolerans strain LJ49     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 658689..659885 660282..662078 flank 397


Gene organization within MGE regions


Location: 658689..662078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG715_RS03330 (HG715_03330) - 658689..659965 (-) 1277 Protein_648 ISL3 family transposase -
  HG715_RS03335 (HG715_03335) pepF 660282..662078 (-) 1797 WP_170073598.1 oligoendopeptidase F Regulator

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68413.55 Da        Isoelectric Point: 5.3086

>NTDB_id=440228 HG715_RS03335 WP_170073598.1 660282..662078(-) (pepF) [Lactobacillus acetotolerans strain LJ49]
MAIPKRAEVPENLRWDLTRVFKSDQDWKDEYNKVKSAVQRLSNLKRNFTKSGKDLYDALTKILAVARHLEKVYTYASMAS
DVDTSDAHYLGYVSQVQSLASQFETNTSFIDPGVLSISDEKLQQFKKDEPRLKNYDHWLEQITKKRPHTLPANEEKLIAG
AGDAMGVSENTFNVLTNSDMEYGYVQTDDGQMVQLTDGLYSQLIQSQNRNVRKGAFDVMYATYGQFENTLASTLSGVVKE
HNYNARVHNYDSARSAALAENGIPTVVYDTLIKEVNDHIDLLHRYVALRKKILGLKDLQMWDMYVPLTGKPALSYTFEEA
KKEAKKALAPLGDDYLKHVDYIFNNRDIDVVESQNKVTGAYSGGCYDTDPYELLNWEDNIDSLYTLVHETGHSVHSLYTR
ENQPYVYGDYPIFVAEIASTTNENILTEYFLDHIKDPKTKAFILNYYLDSFKGTLYRQTQFAEFEQFIHEADAKGEPLTV
DKLNQFYGNLNQHYYGDAVEPGGNIAKEWARIPHFYYDFYVYQYATGFAAASALANKVVHGTDKQRKAYIGFLKAGSSDY
PTEIMKRAGVDMTKPDYLEDAFNTFAKRLDEFENLIEK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=440228 HG715_RS03335 WP_170073598.1 660282..662078(-) (pepF) [Lactobacillus acetotolerans strain LJ49]
ATGGCAATTCCAAAAAGGGCAGAAGTTCCAGAAAATTTGAGATGGGACCTTACCCGCGTCTTCAAGTCCGACCAAGATTG
GAAAGATGAATATAACAAAGTAAAAAGCGCAGTGCAAAGGTTAAGCAACTTAAAAAGAAACTTTACTAAATCCGGGAAAG
ATCTTTACGATGCTTTAACCAAAATATTGGCTGTGGCCCGTCATTTAGAAAAAGTTTACACATATGCCAGCATGGCTAGC
GACGTAGATACATCTGATGCGCATTATTTAGGCTATGTCAGCCAGGTACAAAGCTTGGCCAGCCAATTTGAAACGAACAC
TTCCTTTATTGATCCGGGAGTTTTGAGTATTTCTGATGAAAAACTTCAGCAATTTAAAAAAGATGAACCAAGATTAAAGA
ATTACGACCACTGGCTTGAACAAATCACTAAGAAACGTCCGCATACCTTGCCCGCTAATGAAGAAAAATTAATAGCAGGA
GCTGGAGACGCGATGGGTGTGTCCGAAAACACCTTTAACGTCTTAACCAACTCTGATATGGAATATGGCTACGTTCAAAC
TGATGATGGACAAATGGTACAGCTAACCGACGGACTATATTCGCAACTCATCCAGTCTCAAAATCGTAATGTCCGTAAGG
GTGCTTTCGATGTCATGTATGCAACTTACGGTCAATTTGAAAACACCCTGGCCTCAACTCTTTCTGGGGTTGTAAAAGAG
CACAATTATAATGCACGCGTACACAACTATGATTCTGCCCGCAGTGCCGCCCTCGCAGAAAATGGTATCCCAACAGTAGT
TTATGACACCTTAATCAAGGAAGTTAATGATCATATAGACCTGCTGCACAGGTACGTTGCCCTTCGTAAAAAGATCTTGG
GATTAAAGGATTTGCAAATGTGGGACATGTACGTTCCGTTAACTGGAAAGCCCGCACTTTCTTATACCTTCGAAGAAGCC
AAAAAAGAGGCTAAGAAAGCTTTAGCTCCACTTGGCGATGATTACCTTAAGCACGTTGACTACATCTTTAATAACCGTGA
TATTGACGTTGTCGAGTCACAAAATAAAGTTACCGGCGCATATTCCGGTGGCTGCTACGATACTGACCCGTACGAACTAC
TTAATTGGGAAGACAATATCGATTCACTCTATACTTTAGTCCACGAAACAGGCCACTCCGTTCACAGCTTATACACGCGG
GAGAATCAGCCTTACGTTTACGGTGACTATCCTATCTTTGTGGCCGAAATTGCTTCAACTACTAATGAAAATATTTTGAC
GGAATACTTTTTAGACCATATTAAAGATCCTAAAACCAAAGCCTTCATTTTGAACTATTACCTTGATTCCTTTAAGGGTA
CCTTATACAGGCAGACACAGTTTGCGGAATTTGAGCAGTTTATTCATGAAGCTGACGCCAAGGGTGAACCATTAACGGTA
GACAAATTAAACCAGTTCTATGGCAATCTGAACCAACATTATTATGGGGATGCGGTTGAGCCTGGTGGCAACATTGCTAA
GGAATGGGCAAGAATTCCCCACTTCTACTATGACTTTTACGTCTACCAATACGCTACCGGATTTGCGGCTGCCAGTGCAC
TTGCTAATAAGGTTGTTCACGGAACAGATAAACAGAGAAAAGCTTATATCGGCTTCCTAAAAGCAGGATCTAGCGACTAC
CCAACTGAAATCATGAAGAGGGCTGGGGTTGATATGACTAAACCTGACTACTTAGAAGATGCATTCAATACTTTTGCAAA
ACGTCTAGATGAATTTGAAAATTTAATTGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(115-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.096

99.164

0.507