Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IQS20_RS02790 Genome accession   NZ_CP063499
Coordinates   614949..616376 (-) Length   475 a.a.
NCBI ID   WP_000980610.1    Uniprot ID   -
Organism   Escherichia coli strain EH10-18-47     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 609949..621376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS20_RS02760 (IQS20_02760) yeeZ 610004..610828 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  IQS20_RS02765 (IQS20_02765) yeeY 610874..611803 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IQS20_RS02770 (IQS20_02770) yoeI 612018..612080 (+) 63 WP_010723108.1 membrane protein YoeI -
  IQS20_RS02775 (IQS20_02775) plaP 612070..613428 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IQS20_RS02780 (IQS20_02780) tsuA 613607..614665 (+) 1059 WP_000492312.1 thiosulfate utilization transporter TsuA/YeeE -
  IQS20_RS02785 (IQS20_02785) tsuB 614679..614906 (+) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IQS20_RS02790 (IQS20_02790) sbcB 614949..616376 (-) 1428 WP_000980610.1 exodeoxyribonuclease I Machinery gene
  IQS20_RS02795 (IQS20_02795) dacD 616585..617751 (+) 1167 WP_001351771.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IQS20_RS02800 (IQS20_02800) sbmC 617870..618343 (+) 474 WP_001105408.1 DNA gyrase inhibitor SbmC -
  IQS20_RS02805 (IQS20_02805) yeeA 618541..619599 (+) 1059 WP_001200891.1 FUSC family protein -
  IQS20_RS02810 (IQS20_02810) tmaR 619771..620100 (+) 330 WP_000450409.1 DUF496 family protein -
  IQS20_RS02815 (IQS20_02815) - 620201..620383 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  IQS20_RS02820 (IQS20_02820) - 620437..620583 (+) 147 Protein_554 transposase domain-containing protein -
  IQS20_RS02825 (IQS20_02825) - 620872..620952 (-) 81 Protein_555 hypothetical protein -
  IQS20_RS02830 (IQS20_02830) yeeW 620998..621192 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4720

>NTDB_id=440196 IQS20_RS02790 WP_000980610.1 614949..616376(-) (sbcB) [Escherichia coli strain EH10-18-47]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=440196 IQS20_RS02790 WP_000980610.1 614949..616376(-) (sbcB) [Escherichia coli strain EH10-18-47]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581