Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   HHJ99_RS00895 Genome accession   NZ_CP051643
Coordinates   172215..173261 (+) Length   348 a.a.
NCBI ID   WP_002445475.1    Uniprot ID   A0A1S1GWH6
Organism   Staphylococcus caprae strain SY333     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 167215..178261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ99_RS00865 (HHJ99_00865) - 167372..168097 (+) 726 WP_002445467.1 type 1 glutamine amidotransferase -
  HHJ99_RS00870 (HHJ99_00870) - 168347..168898 (+) 552 WP_002445468.1 hypothetical protein -
  HHJ99_RS00875 (HHJ99_00875) - 169042..170031 (-) 990 WP_002445470.1 aromatic acid exporter family protein -
  HHJ99_RS00880 (HHJ99_00880) map 170206..170961 (+) 756 WP_002445472.1 type I methionyl aminopeptidase -
  HHJ99_RS00885 (HHJ99_00885) - 171116..171502 (+) 387 WP_002445473.1 hypothetical protein -
  HHJ99_RS00890 (HHJ99_00890) liaF 171517..172218 (+) 702 WP_002445474.1 cell wall-active antibiotics response protein LiaF -
  HHJ99_RS00895 (HHJ99_00895) vraS 172215..173261 (+) 1047 WP_002445475.1 sensor histidine kinase Regulator
  HHJ99_RS00900 (HHJ99_00900) vraR 173251..173880 (+) 630 WP_037541848.1 two-component system response regulator VraR Regulator
  HHJ99_RS00905 (HHJ99_00905) - 173941..175197 (-) 1257 WP_002445478.1 YihY/virulence factor BrkB family protein -
  HHJ99_RS00910 (HHJ99_00910) - 175570..175854 (-) 285 WP_002445480.1 hypothetical protein -
  HHJ99_RS00915 (HHJ99_00915) - 175860..176324 (-) 465 WP_002445482.1 low molecular weight protein-tyrosine-phosphatase -
  HHJ99_RS00920 (HHJ99_00920) - 176465..176671 (+) 207 WP_002445484.1 DUF1128 domain-containing protein -
  HHJ99_RS00925 (HHJ99_00925) - 176684..177922 (+) 1239 WP_002445487.1 aminopeptidase -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 40090.48 Da        Isoelectric Point: 6.0593

>NTDB_id=440192 HHJ99_RS00895 WP_002445475.1 172215..173261(+) (vraS) [Staphylococcus caprae strain SY333]
MNHYLRAIGSMLILVYSMLTAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNILIILLCIIVGSVLAYKINQQNDWIKS
QIERSIEGETVGINDQNLELYSETLDIYHTLVPLNQELHRLRMKTQNMTNENYNLNDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESKLEPPLDQQIPVLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVIDLQKKVPMKVVHEI
QDFKVPKGIEDHLFRITQEAISNTLRHSNGSKVTVELFNKEDYLLLRVQDNGKGFNVDEKFEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNKEDESNGD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=440192 HHJ99_RS00895 WP_002445475.1 172215..173261(+) (vraS) [Staphylococcus caprae strain SY333]
ATGAATCACTACTTAAGAGCAATTGGATCGATGCTAATACTTGTCTATAGCATGCTCACTGCTTTTTTATTCATTGACAA
AGTTTTTGTTAATATTATTTATTTTCAAGGGATGTTTTACACCCAAATATTTGGAATCCCTGTGTTTTTATTCTTAAATA
TATTAATTATCTTATTATGCATCATTGTAGGGTCTGTGTTAGCGTACAAAATCAATCAACAAAATGATTGGATTAAATCT
CAAATTGAAAGATCGATTGAAGGGGAAACAGTTGGTATTAACGATCAAAATTTAGAGTTATATAGTGAGACTTTAGATAT
TTATCATACATTGGTACCCTTAAATCAAGAATTGCATCGATTGAGAATGAAAACGCAAAACATGACGAATGAAAACTATA
ATCTAAATGATGTGAAAGTGAAAAAAATTATAGAAGATGAACGCCAGCGCTTGGCTAGAGAATTACATGATTCGGTAAGT
CAGCAATTATTTGCCGCAAGTATGATGCTTTCAGCGATTAAAGAATCTAAATTAGAACCGCCTTTAGACCAACAAATTCC
TGTTCTAGAGAAAATGGTTCAAGATTCACAGCTTGAAATGAGGGCGTTACTTCTACACTTAAGACCTATAGGATTAAAAG
ATAAGTCTCTAGGTGAAGGAATCAAAGATTTAGTCATTGATCTTCAAAAGAAAGTGCCTATGAAAGTAGTTCATGAAATT
CAAGATTTCAAAGTACCTAAAGGTATTGAAGATCATTTGTTTAGAATTACTCAAGAAGCGATTTCCAATACATTAAGACA
TTCGAATGGTTCGAAAGTAACGGTAGAATTATTTAATAAAGAAGATTATTTACTGTTAAGAGTTCAAGATAATGGTAAAG
GTTTCAATGTAGATGAAAAATTTGAACAAAGTTATGGTTTAAAAAATATGAGAGAACGCGCATTAGAGATTGGTGCCACA
TTCCATATCGTATCGTTACCAGATTCAGGTACACGTATAGAAGTCAAAGCACCATTGAACAAGGAGGATGAATCAAATGG
CGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1S1GWH6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

93.878

98.563

0.925