Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   HHJ56_RS06035 Genome accession   NZ_CP051642
Coordinates   1285867..1288332 (-) Length   821 a.a.
NCBI ID   WP_081637512.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280867..1293332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ56_RS06015 (HHJ56_06015) kdsB 1281750..1282532 (-) 783 WP_035685736.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HHJ56_RS06020 (HHJ56_06020) - 1282529..1282711 (-) 183 WP_035685738.1 Trm112 family protein -
  HHJ56_RS06025 (HHJ56_06025) lpxK 1282874..1283884 (-) 1011 WP_035685740.1 tetraacyldisaccharide 4'-kinase -
  HHJ56_RS06030 (HHJ56_06030) msbA 1283900..1285648 (-) 1749 WP_035685742.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  HHJ56_RS06035 (HHJ56_06035) rec2 1285867..1288332 (-) 2466 WP_081637512.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HHJ56_RS06040 (HHJ56_06040) thiM 1288816..1289619 (+) 804 WP_035685744.1 hydroxyethylthiazole kinase -
  HHJ56_RS06045 (HHJ56_06045) thiD 1289631..1290449 (+) 819 WP_035685746.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HHJ56_RS06050 (HHJ56_06050) thiE 1290442..1291104 (+) 663 WP_035685748.1 thiamine phosphate synthase -
  HHJ56_RS06055 (HHJ56_06055) - 1291105..1292325 (+) 1221 WP_035685750.1 NRAMP family divalent metal transporter -

Sequence

Protein


Download         Length: 821 a.a.        Molecular weight: 92363.84 Da        Isoelectric Point: 9.8243

>NTDB_id=440172 HHJ56_RS06035 WP_081637512.1 1285867..1288332(-) (rec2) [Avibacterium paragallinarum strain ADL-AP01]
MNIGLRLDTLLWLVIAAGLTLLFVPQSFLLEPKQSAWLAGITVVGCGVAYWIKRQGLAKFFAYGAIFVLCLADFHYQAQQ
LLQQAHAVAGLEKRIEREIRIVEVLHQQDYQTLIATAQLDETLPEQRLYVQWQRAEKVAVGQRWRAELSLRPLSSRLNEG
GFDRQKWYFSKGITAYARVKSAVKISEDFSWREARLQTAFQHTQALSMQGLLLALGFGERAWLQPTHWQIYQKTNTAHLI
AISGLHIGLAMLLGVGIARGIQFCLPTYWITPMFPLFIGAIIALIYAYLAGFSIPTLRALVALGLVCLVRGLRFYHTPWQ
YFQRVVAVLIFCQPLMVLSVSFWLSVGAVASLILWYQYVPLDLFQPRTDLVRQDRPFSLGAIIGKLILRWCVALLHLQLG
LLLVFTPVQLYFFHGFSLAGMIANVFAVPLFSFFLVPLVLFAVLSNGTFSSWQGANELAEKITVFLSNWQHKWIDLSQTQ
SQWIGLGLCALGLSYVFGLWQVQKNHSLNRQKSIPFVQDRTLAKWKWRLNPDKIPSVLCLKKLGVVLVLIFLVNGGNLLV
THFRQPDWRLETLDVGQGLATLIVKNQRGILYDTGAAWRGGSMAELEILPYLRRQGIVLDYLILSHDDNDHAGGAEAVLR
AYPNATLITSSEKIERKTHRTSCFAGTQWQWQGLQISALSPQKVVKRAENNDSCVLLIDDGRHKVLLTGDAESQIEPQFI
YKAGKIDVLQVGHHGSKTSTSEALVKTLQPSIALISSGRGNPWHFPHYAVLARLQAQQSAVLNTADFGQILLSFSAKKPP
PENISIDTARGTFSPWYRELL

Nucleotide


Download         Length: 2466 bp        

>NTDB_id=440172 HHJ56_RS06035 WP_081637512.1 1285867..1288332(-) (rec2) [Avibacterium paragallinarum strain ADL-AP01]
ATGAACATTGGCCTGAGGCTCGATACCCTGTTATGGCTTGTGATCGCCGCGGGCTTAACCTTGCTTTTTGTGCCGCAATC
TTTTTTGCTTGAGCCAAAGCAAAGTGCGTGGCTGGCGGGGATTACGGTGGTGGGCTGTGGCGTTGCCTATTGGATTAAGC
GTCAAGGACTAGCGAAATTTTTCGCCTATGGTGCGATATTTGTGCTATGCCTTGCGGATTTTCATTATCAGGCACAGCAG
CTCTTACAGCAGGCTCACGCCGTTGCGGGGCTTGAAAAACGCATTGAGCGGGAAATTCGCATTGTCGAAGTACTACATCA
GCAAGATTATCAAACCCTTATCGCCACCGCTCAGCTTGATGAAACCCTGCCTGAACAACGCCTTTATGTGCAATGGCAAA
GGGCGGAAAAAGTGGCTGTCGGACAGCGTTGGCGAGCGGAATTATCCCTACGTCCATTGTCTAGTCGGCTAAATGAGGGG
GGATTTGATCGGCAAAAATGGTATTTTTCAAAGGGGATTACCGCCTATGCAAGGGTGAAAAGTGCGGTCAAAATTTCGGA
AGATTTTTCTTGGCGGGAAGCAAGGTTACAAACCGCATTTCAGCACACTCAAGCCCTCTCAATGCAAGGGCTATTGCTGG
CGTTAGGATTTGGTGAACGGGCGTGGTTGCAGCCAACTCATTGGCAAATCTACCAAAAAACCAATACCGCTCATCTTATC
GCTATTTCAGGGCTACATATTGGCTTGGCAATGTTGCTTGGCGTTGGCATTGCTCGAGGGATACAATTTTGCTTGCCGAC
CTATTGGATCACGCCGATGTTTCCGCTTTTTATTGGGGCAATAATCGCGTTGATTTATGCCTATTTAGCGGGATTTTCTA
TTCCCACCCTGCGGGCGTTGGTAGCATTGGGGCTAGTGTGTTTAGTGCGAGGGTTGCGTTTTTATCACACCCCTTGGCAA
TATTTTCAGCGGGTGGTAGCAGTGCTGATTTTCTGCCAGCCGTTAATGGTGCTATCGGTGAGTTTTTGGCTATCAGTAGG
GGCGGTAGCAAGTTTGATTTTATGGTATCAATATGTGCCGTTGGATTTGTTTCAGCCACGAACTGATTTAGTCAGGCAGG
ATCGCCCGTTCTCTTTAGGGGCAATAATCGGTAAGCTCATACTACGCTGGTGCGTAGCATTGTTGCATTTGCAACTGGGC
TTATTGTTAGTGTTTACCCCCGTTCAGCTTTACTTTTTTCACGGTTTTTCTTTAGCGGGAATGATCGCGAATGTTTTTGC
TGTACCGTTGTTCAGCTTTTTTCTTGTTCCGCTCGTGCTATTTGCGGTACTCAGTAACGGCACATTTTCTTCTTGGCAAG
GAGCAAATGAATTGGCAGAAAAGATCACCGTTTTTCTGTCAAATTGGCAACATAAATGGATCGATCTTTCCCAAACGCAA
TCGCAATGGATCGGGCTTGGGCTGTGTGCATTGGGGCTGAGCTATGTTTTTGGCTTATGGCAGGTACAGAAAAATCACTC
GCTGAATAGGCAAAAATCCATTCCGTTCGTTCAGGATCGCACTTTGGCAAAATGGAAATGGAGGTTAAACCCTGACAAAA
TCCCCTCAGTATTATGCTTAAAAAAGCTAGGTGTTGTACTGGTGCTTATTTTTCTCGTCAATGGCGGAAATTTGTTGGTA
ACCCATTTTCGGCAACCCGATTGGCGGCTTGAAACCCTTGATGTGGGGCAGGGGCTTGCCACCTTGATCGTGAAAAATCA
GCGTGGCATTTTATATGATACGGGCGCAGCCTGGCGTGGCGGAAGTATGGCAGAATTAGAAATTTTGCCTTATTTACGGC
GGCAGGGTATTGTGCTGGATTACCTTATTTTAAGCCACGACGACAATGATCACGCAGGCGGGGCTGAAGCGGTGTTGCGG
GCTTATCCCAATGCGACGCTCATTACGTCATCGGAAAAAATCGAGCGAAAAACGCACCGCACTTCTTGTTTCGCGGGAAC
GCAATGGCAGTGGCAAGGGTTGCAGATTTCAGCCCTTTCACCGCAAAAGGTGGTGAAACGAGCGGAAAATAATGATTCGT
GCGTGCTGTTGATCGATGATGGGCGGCATAAAGTGTTGCTCACAGGCGACGCGGAAAGCCAAATTGAACCACAGTTTATT
TACAAGGCAGGGAAAATTGACGTGTTACAGGTCGGACATCACGGCAGCAAAACCTCTACCAGCGAGGCATTGGTGAAAAC
CTTGCAACCTAGCATTGCGTTGATTTCTAGTGGACGGGGAAACCCTTGGCATTTCCCGCATTACGCGGTGTTAGCACGTT
TGCAAGCACAGCAAAGTGCGGTGTTAAATACGGCAGATTTTGGACAAATTCTCCTTTCTTTTTCAGCCAAGAAACCACCG
CCTGAAAATATCAGCATTGACACCGCACGGGGAACGTTTTCCCCTTGGTATCGGGAATTATTGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(215-497)

Metallo-beta-lactamase superfamily (Lactamase_B)

(574-756)

Domain of unknown function (DUF4131) (DUF4131)

(35-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

53.072

93.179

0.495