Detailed information NTG0440123

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: IQS14_RS03520
• Genome accession: NZ_CP063492
• Coordinates: 743331..744356 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain EF5-18-41
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 738331..749356

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IQS14_RS03495 (IQS14_03495)	rraA	738745..739230 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
IQS14_RS03500 (IQS14_03500)	menA	739323..740249 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
IQS14_RS03505 (IQS14_03505)	hslU	740316..741647 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
IQS14_RS03510 (IQS14_03510)	hslV	741657..742187 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
IQS14_RS03515 (IQS14_03515)	ftsN	742280..743239 (-)	960	WP_000068844.1	cell division protein FtsN	-
IQS14_RS03520 (IQS14_03520)	cytR	743331..744356 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
IQS14_RS03525 (IQS14_03525)	priA	744512..746710 (-)	2199	WP_001309891.1	primosomal protein N'	Machinery gene
IQS14_RS03530 (IQS14_03530)	rpmE	746913..747125 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
IQS14_RS03535 (IQS14_03535)	yiiX	747186..747794 (-)	609	WP_000702318.1	YiiX family permuted papain-like enzyme	-
IQS14_RS03540 (IQS14_03540)	metJ	747854..748171 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=440123 IQS14_RS03520 WP_000644904.1 743331..744356(-) (cytR) [Escherichia coli strain EF5-18-41]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=440123 IQS14_RS03520 WP_000644904.1 743331..744356(-) (cytR) [Escherichia coli strain EF5-18-41]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGACGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCGCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628