Detailed information NTG0440079

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IQS15_RS13705
• Genome accession: NZ_CP063487
• Coordinates: 2850187..2851179 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EF7-18-51
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2845187..2856179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IQS15_RS13675 (IQS15_13680)	ispD	2845248..2845958 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IQS15_RS13680 (IQS15_13685)	ispF	2845958..2846437 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IQS15_RS13685 (IQS15_13690)	truD	2846434..2847483 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
IQS15_RS13690 (IQS15_13695)	surE	2847464..2848225 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IQS15_RS13695 (IQS15_13700)	pcm	2848219..2848845 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IQS15_RS13700 (IQS15_13705)	nlpD	2849030..2850124 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IQS15_RS13705 (IQS15_13710)	rpoS	2850187..2851179 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IQS15_RS13710 (IQS15_13715)	ygbN	2851273..2852637 (-)	1365	WP_000104441.1	GntP family transporter	-
IQS15_RS13715 (IQS15_13720)	ygbM	2852726..2853502 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
IQS15_RS13720 (IQS15_13725)	ygbL	2853507..2854145 (-)	639	WP_001278994.1	aldolase	-
IQS15_RS13725 (IQS15_13730)	otnK	2854142..2855404 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=440079 IQS15_RS13705 WP_000081550.1 2850187..2851179(+) (rpoS) [Escherichia coli strain EF7-18-51]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=440079 IQS15_RS13705 WP_000081550.1 2850187..2851179(+) (rpoS) [Escherichia coli strain EF7-18-51]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715