Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IQS21_RS11950 Genome accession   NZ_CP063483
Coordinates   2536048..2537472 (-) Length   474 a.a.
NCBI ID   WP_032329337.1    Uniprot ID   -
Organism   Escherichia coli strain EM03-18-08     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2531048..2542472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS21_RS11920 (IQS21_11935) yeeZ 2531103..2531927 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  IQS21_RS11925 (IQS21_11940) yeeY 2531973..2532902 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IQS21_RS11930 (IQS21_11945) yoeI 2533117..2533179 (+) 63 WP_010723108.1 membrane protein YoeI -
  IQS21_RS11935 (IQS21_11950) plaP 2533169..2534527 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IQS21_RS11940 (IQS21_11955) tsuA 2534706..2535764 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  IQS21_RS11945 (IQS21_11960) tsuB 2535778..2536005 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IQS21_RS11950 (IQS21_11965) sbcB 2536048..2537472 (-) 1425 WP_032329337.1 exodeoxyribonuclease I Machinery gene
  IQS21_RS11955 (IQS21_11970) - 2537654..2538829 (+) 1176 Protein_2344 site-specific integrase -
  IQS21_RS11960 (IQS21_11975) - 2538810..2539001 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  IQS21_RS11965 (IQS21_11980) - 2539106..2539285 (-) 180 WP_001277767.1 Eag protein -
  IQS21_RS24115 - 2539382..2539558 (-) 177 WP_247163501.1 DUF551 domain-containing protein -
  IQS21_RS24120 - 2539808..2539903 (-) 96 Protein_2348 hypothetical protein -
  IQS21_RS24125 - 2540162..2540305 (-) 144 Protein_2349 DUF551 domain-containing protein -
  IQS21_RS11975 (IQS21_11990) - 2540307..2541032 (-) 726 WP_203129179.1 ead/Ea22-like family protein -
  IQS21_RS11980 (IQS21_11995) - 2541029..2541196 (-) 168 WP_001214454.1 DUF2737 family protein -
  IQS21_RS11985 (IQS21_12000) - 2541207..2541503 (-) 297 WP_062864886.1 phage anti-RecBCD protein -
  IQS21_RS11990 (IQS21_12005) - 2541527..2541910 (-) 384 WP_112017930.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54400.63 Da        Isoelectric Point: 5.3498

>NTDB_id=439996 IQS21_RS11950 WP_032329337.1 2536048..2537472(-) (sbcB) [Escherichia coli strain EM03-18-08]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
ATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=439996 IQS21_RS11950 WP_032329337.1 2536048..2537472(-) (sbcB) [Escherichia coli strain EM03-18-08]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAACAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
AGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGATCTTCACGTCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584