Detailed information NTG0439983

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IQS21_RS08190
• Genome accession: NZ_CP063483
• Coordinates: 1734274..1735266 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EM03-18-08
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1729274..1740266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IQS21_RS08160 (IQS21_08160)	ispD	1729335..1730045 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IQS21_RS08165 (IQS21_08165)	ispF	1730045..1730524 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IQS21_RS08170 (IQS21_08170)	truD	1730521..1731570 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IQS21_RS08175 (IQS21_08175)	surE	1731551..1732312 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IQS21_RS08180 (IQS21_08180)	pcm	1732306..1732932 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IQS21_RS08185 (IQS21_08185)	nlpD	1733117..1734211 (+)	1095	WP_306433997.1	murein hydrolase activator NlpD	-
IQS21_RS08190 (IQS21_08190)	rpoS	1734274..1735266 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IQS21_RS08195 (IQS21_08195)	ygbN	1735360..1736724 (-)	1365	WP_000104441.1	GntP family transporter	-
IQS21_RS08200 (IQS21_08200)	ygbM	1736813..1737589 (-)	777	Protein_1608	HPr family phosphocarrier protein	-
IQS21_RS08205 (IQS21_08205)	ygbL	1737594..1738232 (-)	639	WP_001278994.1	aldolase	-
IQS21_RS08210 (IQS21_08210)	otnK	1738229..1739491 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=439983 IQS21_RS08190 WP_000081550.1 1734274..1735266(+) (rpoS) [Escherichia coli strain EM03-18-08]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=439983 IQS21_RS08190 WP_000081550.1 1734274..1735266(+) (rpoS) [Escherichia coli strain EM03-18-08]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715