Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IQS22_RS17080 Genome accession   NZ_CP063479
Coordinates   3541151..3542578 (+) Length   475 a.a.
NCBI ID   WP_001618667.1    Uniprot ID   -
Organism   Escherichia coli strain EM06-18-14     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3536151..3547578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS22_RS17040 (IQS22_17050) yeeW 3536335..3536529 (+) 195 WP_000988600.1 DUF5983 family protein -
  IQS22_RS17045 (IQS22_17055) - 3536575..3536655 (+) 81 Protein_3362 hypothetical protein -
  IQS22_RS17050 (IQS22_17060) - 3536944..3537090 (-) 147 Protein_3363 transposase domain-containing protein -
  IQS22_RS17055 (IQS22_17065) - 3537144..3537326 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  IQS22_RS17060 (IQS22_17070) tmaR 3537427..3537756 (-) 330 WP_000450409.1 DUF496 family protein -
  IQS22_RS17065 (IQS22_17075) yeeA 3537928..3538986 (-) 1059 WP_001200890.1 FUSC family protein -
  IQS22_RS17070 (IQS22_17080) sbmC 3539184..3539657 (-) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  IQS22_RS17075 (IQS22_17085) dacD 3539776..3540942 (-) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IQS22_RS17080 (IQS22_17090) sbcB 3541151..3542578 (+) 1428 WP_001618667.1 exodeoxyribonuclease I Machinery gene
  IQS22_RS17085 (IQS22_17095) tsuB 3542621..3542848 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IQS22_RS17090 (IQS22_17100) tsuA 3542862..3543920 (-) 1059 WP_024193414.1 thiosulfate utilization transporter TsuA/YeeE -
  IQS22_RS17095 (IQS22_17105) plaP 3544099..3545457 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IQS22_RS17100 (IQS22_17110) yoeI 3545447..3545509 (-) 63 WP_010723108.1 membrane protein YoeI -
  IQS22_RS17105 (IQS22_17115) yeeY 3545724..3546653 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IQS22_RS17110 (IQS22_17120) yeeZ 3546699..3547523 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.84 Da        Isoelectric Point: 5.4700

>NTDB_id=439922 IQS22_RS17080 WP_001618667.1 3541151..3542578(+) (sbcB) [Escherichia coli strain EM06-18-14]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=439922 IQS22_RS17080 WP_001618667.1 3541151..3542578(+) (sbcB) [Escherichia coli strain EM06-18-14]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAAGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585